Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2100

Experiment: Pyruvate-Sulfate (60-15mM) with Chromate 50uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcooC-2 and DVU2100 are separated by 140 nucleotidesDVU2100 and DVU2101 are separated by 225 nucleotides DVU2099: cooC-2 - carbon monoxide dehydrogenase accessory protein CooC, putative (TIGR), at 2,188,270 to 2,189,151 cooC-2 DVU2100: DVU2100 - universal stress protein family (TIGR), at 2,189,292 to 2,189,708 DVU2100 DVU2101: DVU2101 - conserved hypothetical protein (TIGR), at 2,189,934 to 2,195,285 DVU2101 Position (kb) 2189 2190Strain fitness (log2 ratio) -2 -1 0 1at 2188.358 kb on + strandat 2188.585 kb on + strand, within cooC-2at 2188.658 kb on - strand, within cooC-2at 2188.831 kb on + strand, within cooC-2at 2188.839 kb on - strand, within cooC-2at 2188.839 kb on - strand, within cooC-2at 2188.839 kb on - strand, within cooC-2at 2189.125 kb on - strandat 2189.366 kb on + strand, within DVU2100at 2189.418 kb on - strand, within DVU2100at 2189.418 kb on - strand, within DVU2100at 2189.564 kb on - strand, within DVU2100at 2189.591 kb on - strand, within DVU2100at 2189.616 kb on + strand, within DVU2100at 2189.628 kb on + strand, within DVU2100at 2189.663 kb on - strand, within DVU2100at 2189.684 kb on + strandat 2189.692 kb on - strandat 2189.718 kb on - strandat 2189.757 kb on - strandat 2189.804 kb on - strandat 2190.027 kb on - strandat 2190.081 kb on + strandat 2190.135 kb on - strandat 2190.246 kb on + strandat 2190.290 kb on - strandat 2190.334 kb on - strandat 2190.336 kb on + strandat 2190.344 kb on - strandat 2190.372 kb on + strandat 2190.466 kb on + strandat 2190.502 kb on + strand, within DVU2101at 2190.595 kb on - strand, within DVU2101at 2190.660 kb on + strand, within DVU2101at 2190.660 kb on + strand, within DVU2101at 2190.668 kb on - strand, within DVU2101

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Chromate 50uM
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2,188,358 + +0.7
2,188,585 + cooC-2 DVU2099 0.36 -0.6
2,188,658 - cooC-2 DVU2099 0.44 -0.5
2,188,831 + cooC-2 DVU2099 0.64 +0.7
2,188,839 - cooC-2 DVU2099 0.65 -0.0
2,188,839 - cooC-2 DVU2099 0.65 -0.2
2,188,839 - cooC-2 DVU2099 0.65 -0.3
2,189,125 - -0.5
2,189,366 + DVU2100 0.18 -0.6
2,189,418 - DVU2100 0.30 -0.1
2,189,418 - DVU2100 0.30 -2.2
2,189,564 - DVU2100 0.65 -1.2
2,189,591 - DVU2100 0.72 -0.7
2,189,616 + DVU2100 0.78 -0.1
2,189,628 + DVU2100 0.81 -0.1
2,189,663 - DVU2100 0.89 +0.1
2,189,684 + -1.0
2,189,692 - -0.9
2,189,718 - -0.1
2,189,757 - -0.2
2,189,804 - +1.2
2,190,027 - +0.2
2,190,081 + -0.8
2,190,135 - +1.0
2,190,246 + -0.7
2,190,290 - +0.7
2,190,334 - -0.5
2,190,336 + -0.3
2,190,344 - -1.3
2,190,372 + -1.2
2,190,466 + -0.6
2,190,502 + DVU2101 0.11 -0.0
2,190,595 - DVU2101 0.12 +1.3
2,190,660 + DVU2101 0.14 -1.3
2,190,660 + DVU2101 0.14 -1.0
2,190,668 - DVU2101 0.14 -0.5

Or see this region's nucleotide sequence