Experiment: SMN_rich
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3798 and Rru_A3799 are separated by 73 nucleotides Rru_A3799 and Rru_A3800 are separated by 18 nucleotides Rru_A3800 and Rru_A3801 are separated by 111 nucleotides
Rru_A3798: Rru_A3798 - Ubiquinone/menaquinone biosynthesis methyltransferase (NCBI), at 4,348,773 to 4,349,585
_A3798
Rru_A3799: Rru_A3799 - DNA-formamidopyrimidine glycosylase (NCBI), at 4,349,659 to 4,350,504
_A3799
Rru_A3800: Rru_A3800 - hypothetical protein (NCBI), at 4,350,523 to 4,350,984
_A3800
Rru_A3801: Rru_A3801 - Enoyl-CoA hydratase/isomerase (NCBI), at 4,351,096 to 4,351,872
_A3801
Position (kb) 4350
4351 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4349.559 kb on - strand at 4349.559 kb on - strand at 4349.559 kb on - strand at 4349.559 kb on - strand at 4349.559 kb on - strand at 4349.559 kb on - strand at 4349.562 kb on - strand at 4349.564 kb on - strand at 4349.564 kb on - strand at 4349.564 kb on - strand at 4349.658 kb on + strand at 4349.658 kb on + strand at 4349.658 kb on + strand at 4349.658 kb on + strand at 4349.659 kb on - strand at 4349.670 kb on - strand at 4349.811 kb on + strand, within Rru_A3799 at 4349.833 kb on + strand, within Rru_A3799 at 4349.833 kb on + strand, within Rru_A3799 at 4349.834 kb on - strand, within Rru_A3799 at 4349.834 kb on - strand, within Rru_A3799 at 4349.834 kb on - strand, within Rru_A3799 at 4349.840 kb on + strand, within Rru_A3799 at 4349.946 kb on + strand, within Rru_A3799 at 4349.947 kb on - strand, within Rru_A3799 at 4350.183 kb on + strand, within Rru_A3799 at 4350.183 kb on + strand, within Rru_A3799 at 4350.184 kb on - strand, within Rru_A3799 at 4350.184 kb on - strand, within Rru_A3799 at 4350.184 kb on - strand, within Rru_A3799 at 4350.184 kb on - strand, within Rru_A3799 at 4350.187 kb on + strand, within Rru_A3799 at 4350.188 kb on - strand, within Rru_A3799 at 4350.188 kb on - strand, within Rru_A3799 at 4350.188 kb on - strand, within Rru_A3799 at 4350.188 kb on - strand, within Rru_A3799 at 4350.188 kb on - strand, within Rru_A3799 at 4350.188 kb on - strand, within Rru_A3799 at 4350.188 kb on - strand, within Rru_A3799 at 4350.188 kb on - strand, within Rru_A3799 at 4350.361 kb on + strand, within Rru_A3799 at 4350.362 kb on - strand, within Rru_A3799 at 4350.386 kb on - strand, within Rru_A3799 at 4350.510 kb on + strand at 4350.510 kb on + strand at 4350.510 kb on + strand at 4350.565 kb on + strand at 4350.627 kb on - strand, within Rru_A3800 at 4350.845 kb on - strand, within Rru_A3800 at 4350.845 kb on - strand, within Rru_A3800 at 4351.070 kb on + strand at 4351.070 kb on + strand at 4351.070 kb on + strand at 4351.070 kb on + strand at 4351.071 kb on - strand at 4351.318 kb on + strand, within Rru_A3801 at 4351.319 kb on - strand, within Rru_A3801 at 4351.319 kb on - strand, within Rru_A3801 at 4351.320 kb on + strand, within Rru_A3801 at 4351.928 kb on + strand at 4351.930 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich remove 4,349,559 - -0.1 4,349,559 - -0.1 4,349,559 - -0.2 4,349,559 - -0.8 4,349,559 - -1.1 4,349,559 - -0.6 4,349,562 - -0.4 4,349,564 - -0.1 4,349,564 - -0.2 4,349,564 - +0.4 4,349,658 + -0.3 4,349,658 + -0.6 4,349,658 + -0.1 4,349,658 + +0.4 4,349,659 - -0.6 4,349,670 - +0.0 4,349,811 + Rru_A3799 0.18 -0.9 4,349,833 + Rru_A3799 0.21 +0.5 4,349,833 + Rru_A3799 0.21 +0.4 4,349,834 - Rru_A3799 0.21 -0.3 4,349,834 - Rru_A3799 0.21 -1.3 4,349,834 - Rru_A3799 0.21 +1.4 4,349,840 + Rru_A3799 0.21 +0.1 4,349,946 + Rru_A3799 0.34 -0.6 4,349,947 - Rru_A3799 0.34 -0.1 4,350,183 + Rru_A3799 0.62 +0.7 4,350,183 + Rru_A3799 0.62 -0.1 4,350,184 - Rru_A3799 0.62 -0.9 4,350,184 - Rru_A3799 0.62 +0.2 4,350,184 - Rru_A3799 0.62 -0.1 4,350,184 - Rru_A3799 0.62 -0.4 4,350,187 + Rru_A3799 0.62 -0.2 4,350,188 - Rru_A3799 0.63 -0.1 4,350,188 - Rru_A3799 0.63 -0.5 4,350,188 - Rru_A3799 0.63 -0.2 4,350,188 - Rru_A3799 0.63 +0.1 4,350,188 - Rru_A3799 0.63 +1.4 4,350,188 - Rru_A3799 0.63 +1.4 4,350,188 - Rru_A3799 0.63 -0.2 4,350,188 - Rru_A3799 0.63 +1.4 4,350,361 + Rru_A3799 0.83 -0.0 4,350,362 - Rru_A3799 0.83 -0.1 4,350,386 - Rru_A3799 0.86 -0.1 4,350,510 + +1.4 4,350,510 + +2.0 4,350,510 + -0.4 4,350,565 + +0.1 4,350,627 - Rru_A3800 0.23 -0.6 4,350,845 - Rru_A3800 0.70 -1.3 4,350,845 - Rru_A3800 0.70 -0.9 4,351,070 + -0.5 4,351,070 + -1.4 4,351,070 + -0.2 4,351,070 + -0.3 4,351,071 - -0.6 4,351,318 + Rru_A3801 0.29 -1.5 4,351,319 - Rru_A3801 0.29 -0.6 4,351,319 - Rru_A3801 0.29 -2.6 4,351,320 + Rru_A3801 0.29 -0.9 4,351,928 + -1.5 4,351,930 + +0.6
Or see this region's nucleotide sequence