Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3797

Experiment: SMN_rich

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3796 and Rru_A3797 are separated by 331 nucleotidesRru_A3797 and Rru_A3798 are separated by 1 nucleotidesRru_A3798 and Rru_A3799 are separated by 73 nucleotides Rru_A3796: Rru_A3796 - DNA/pantothenate metabolism flavoprotein (NCBI), at 4,345,606 to 4,346,880 _A3796 Rru_A3797: Rru_A3797 - 2-polyprenylphenol 6-hydroxylase (NCBI), at 4,347,212 to 4,348,771 _A3797 Rru_A3798: Rru_A3798 - Ubiquinone/menaquinone biosynthesis methyltransferase (NCBI), at 4,348,773 to 4,349,585 _A3798 Rru_A3799: Rru_A3799 - DNA-formamidopyrimidine glycosylase (NCBI), at 4,349,659 to 4,350,504 _A3799 Position (kb) 4347 4348 4349Strain fitness (log2 ratio) -2 -1 0 1at 4346.830 kb on - strandat 4346.884 kb on - strandat 4346.970 kb on - strandat 4346.981 kb on - strandat 4347.000 kb on + strandat 4347.002 kb on + strandat 4347.003 kb on - strandat 4347.213 kb on + strandat 4347.214 kb on - strandat 4347.214 kb on - strandat 4347.214 kb on - strandat 4347.236 kb on + strandat 4347.237 kb on - strandat 4347.237 kb on - strandat 4347.350 kb on - strandat 4347.505 kb on + strand, within Rru_A3797at 4347.505 kb on + strand, within Rru_A3797at 4347.505 kb on + strand, within Rru_A3797at 4347.505 kb on + strand, within Rru_A3797at 4347.505 kb on + strand, within Rru_A3797at 4347.505 kb on + strand, within Rru_A3797at 4347.505 kb on + strand, within Rru_A3797at 4347.505 kb on + strand, within Rru_A3797at 4347.506 kb on - strand, within Rru_A3797at 4347.506 kb on - strand, within Rru_A3797at 4347.506 kb on - strand, within Rru_A3797at 4347.506 kb on - strand, within Rru_A3797at 4347.808 kb on - strand, within Rru_A3797at 4347.886 kb on + strand, within Rru_A3797at 4347.887 kb on - strand, within Rru_A3797at 4347.887 kb on - strand, within Rru_A3797at 4348.754 kb on - strandat 4349.559 kb on - strandat 4349.559 kb on - strandat 4349.559 kb on - strandat 4349.559 kb on - strandat 4349.559 kb on - strandat 4349.559 kb on - strandat 4349.562 kb on - strandat 4349.564 kb on - strandat 4349.564 kb on - strandat 4349.564 kb on - strandat 4349.658 kb on + strandat 4349.658 kb on + strandat 4349.658 kb on + strandat 4349.658 kb on + strandat 4349.659 kb on - strandat 4349.670 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich
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4,346,830 - +0.4
4,346,884 - -0.1
4,346,970 - -0.6
4,346,981 - -0.4
4,347,000 + -2.1
4,347,002 + +0.0
4,347,003 - +1.4
4,347,213 + -1.4
4,347,214 - +1.4
4,347,214 - -0.4
4,347,214 - -0.6
4,347,236 + -1.2
4,347,237 - -0.1
4,347,237 - -0.3
4,347,350 - -0.9
4,347,505 + Rru_A3797 0.19 -0.9
4,347,505 + Rru_A3797 0.19 +1.4
4,347,505 + Rru_A3797 0.19 -1.1
4,347,505 + Rru_A3797 0.19 -1.2
4,347,505 + Rru_A3797 0.19 +0.2
4,347,505 + Rru_A3797 0.19 -0.8
4,347,505 + Rru_A3797 0.19 -1.1
4,347,505 + Rru_A3797 0.19 -0.7
4,347,506 - Rru_A3797 0.19 -1.2
4,347,506 - Rru_A3797 0.19 -0.8
4,347,506 - Rru_A3797 0.19 -0.6
4,347,506 - Rru_A3797 0.19 -1.2
4,347,808 - Rru_A3797 0.38 -0.1
4,347,886 + Rru_A3797 0.43 -0.8
4,347,887 - Rru_A3797 0.43 -0.7
4,347,887 - Rru_A3797 0.43 -0.2
4,348,754 - -0.4
4,349,559 - -0.1
4,349,559 - -0.1
4,349,559 - -0.2
4,349,559 - -0.8
4,349,559 - -1.1
4,349,559 - -0.6
4,349,562 - -0.4
4,349,564 - -0.1
4,349,564 - -0.2
4,349,564 - +0.4
4,349,658 + -0.3
4,349,658 + -0.6
4,349,658 + -0.1
4,349,658 + +0.4
4,349,659 - -0.6
4,349,670 - +0.0

Or see this region's nucleotide sequence