Experiment: SMN_rich
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3796 and Rru_A3797 are separated by 331 nucleotides Rru_A3797 and Rru_A3798 are separated by 1 nucleotides Rru_A3798 and Rru_A3799 are separated by 73 nucleotides
Rru_A3796: Rru_A3796 - DNA/pantothenate metabolism flavoprotein (NCBI), at 4,345,606 to 4,346,880
_A3796
Rru_A3797: Rru_A3797 - 2-polyprenylphenol 6-hydroxylase (NCBI), at 4,347,212 to 4,348,771
_A3797
Rru_A3798: Rru_A3798 - Ubiquinone/menaquinone biosynthesis methyltransferase (NCBI), at 4,348,773 to 4,349,585
_A3798
Rru_A3799: Rru_A3799 - DNA-formamidopyrimidine glycosylase (NCBI), at 4,349,659 to 4,350,504
_A3799
Position (kb)
4347
4348
4349 Strain fitness (log2 ratio)
-2
-1
0
1 at 4346.830 kb on - strand at 4346.884 kb on - strand at 4346.970 kb on - strand at 4346.981 kb on - strand at 4347.000 kb on + strand at 4347.002 kb on + strand at 4347.003 kb on - strand at 4347.213 kb on + strand at 4347.214 kb on - strand at 4347.214 kb on - strand at 4347.214 kb on - strand at 4347.236 kb on + strand at 4347.237 kb on - strand at 4347.237 kb on - strand at 4347.350 kb on - strand at 4347.505 kb on + strand, within Rru_A3797 at 4347.505 kb on + strand, within Rru_A3797 at 4347.505 kb on + strand, within Rru_A3797 at 4347.505 kb on + strand, within Rru_A3797 at 4347.505 kb on + strand, within Rru_A3797 at 4347.505 kb on + strand, within Rru_A3797 at 4347.505 kb on + strand, within Rru_A3797 at 4347.505 kb on + strand, within Rru_A3797 at 4347.506 kb on - strand, within Rru_A3797 at 4347.506 kb on - strand, within Rru_A3797 at 4347.506 kb on - strand, within Rru_A3797 at 4347.506 kb on - strand, within Rru_A3797 at 4347.808 kb on - strand, within Rru_A3797 at 4347.886 kb on + strand, within Rru_A3797 at 4347.887 kb on - strand, within Rru_A3797 at 4347.887 kb on - strand, within Rru_A3797 at 4348.754 kb on - strand at 4349.559 kb on - strand at 4349.559 kb on - strand at 4349.559 kb on - strand at 4349.559 kb on - strand at 4349.559 kb on - strand at 4349.559 kb on - strand at 4349.562 kb on - strand at 4349.564 kb on - strand at 4349.564 kb on - strand at 4349.564 kb on - strand at 4349.658 kb on + strand at 4349.658 kb on + strand at 4349.658 kb on + strand at 4349.658 kb on + strand at 4349.659 kb on - strand at 4349.670 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich remove 4,346,830 - +0.4 4,346,884 - -0.1 4,346,970 - -0.6 4,346,981 - -0.4 4,347,000 + -2.1 4,347,002 + +0.0 4,347,003 - +1.4 4,347,213 + -1.4 4,347,214 - +1.4 4,347,214 - -0.4 4,347,214 - -0.6 4,347,236 + -1.2 4,347,237 - -0.1 4,347,237 - -0.3 4,347,350 - -0.9 4,347,505 + Rru_A3797 0.19 -0.9 4,347,505 + Rru_A3797 0.19 +1.4 4,347,505 + Rru_A3797 0.19 -1.1 4,347,505 + Rru_A3797 0.19 -1.2 4,347,505 + Rru_A3797 0.19 +0.2 4,347,505 + Rru_A3797 0.19 -0.8 4,347,505 + Rru_A3797 0.19 -1.1 4,347,505 + Rru_A3797 0.19 -0.7 4,347,506 - Rru_A3797 0.19 -1.2 4,347,506 - Rru_A3797 0.19 -0.8 4,347,506 - Rru_A3797 0.19 -0.6 4,347,506 - Rru_A3797 0.19 -1.2 4,347,808 - Rru_A3797 0.38 -0.1 4,347,886 + Rru_A3797 0.43 -0.8 4,347,887 - Rru_A3797 0.43 -0.7 4,347,887 - Rru_A3797 0.43 -0.2 4,348,754 - -0.4 4,349,559 - -0.1 4,349,559 - -0.1 4,349,559 - -0.2 4,349,559 - -0.8 4,349,559 - -1.1 4,349,559 - -0.6 4,349,562 - -0.4 4,349,564 - -0.1 4,349,564 - -0.2 4,349,564 - +0.4 4,349,658 + -0.3 4,349,658 + -0.6 4,349,658 + -0.1 4,349,658 + +0.4 4,349,659 - -0.6 4,349,670 - +0.0
Or see this region's nucleotide sequence