Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3739

Experiment: SMN_rich

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3737 and Rru_A3738 are separated by 9 nucleotidesRru_A3738 and Rru_A3739 overlap by 4 nucleotidesRru_A3739 and Rru_A3740 are separated by 357 nucleotidesRru_A3740 and Rru_A3741 overlap by 4 nucleotides Rru_A3737: Rru_A3737 - KAP P-loop (NCBI), at 4,286,428 to 4,287,762 _A3737 Rru_A3738: Rru_A3738 - Phage integrase (NCBI), at 4,287,772 to 4,288,758 _A3738 Rru_A3739: Rru_A3739 - hypothetical protein (NCBI), at 4,288,755 to 4,290,449 _A3739 Rru_A3740: Rru_A3740 - Shikimate kinase (NCBI), at 4,290,807 to 4,291,373 _A3740 Rru_A3741: Rru_A3741 - 3-dehydroquinate synthase (NCBI), at 4,291,370 to 4,292,527 _A3741 Position (kb) 4288 4289 4290 4291Strain fitness (log2 ratio) -1 0 1at 4287.777 kb on + strandat 4289.147 kb on - strand, within Rru_A3739at 4289.243 kb on - strand, within Rru_A3739at 4289.426 kb on - strand, within Rru_A3739at 4289.432 kb on - strand, within Rru_A3739at 4289.594 kb on - strand, within Rru_A3739at 4289.868 kb on + strand, within Rru_A3739at 4290.667 kb on + strandat 4290.668 kb on - strandat 4290.686 kb on - strandat 4290.686 kb on - strandat 4290.686 kb on - strandat 4290.690 kb on - strandat 4290.720 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich
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4,287,777 + +0.4
4,289,147 - Rru_A3739 0.23 -0.9
4,289,243 - Rru_A3739 0.29 +0.6
4,289,426 - Rru_A3739 0.40 -1.5
4,289,432 - Rru_A3739 0.40 -0.8
4,289,594 - Rru_A3739 0.49 -0.4
4,289,868 + Rru_A3739 0.66 -1.1
4,290,667 + -0.2
4,290,668 - +1.4
4,290,686 - -0.5
4,290,686 - -0.1
4,290,686 - -0.1
4,290,690 - -0.3
4,290,720 + -1.3

Or see this region's nucleotide sequence