Experiment: SMN_rich
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3691 and Rru_A3692 are separated by 29 nucleotides Rru_A3692 and Rru_A3693 overlap by 4 nucleotides Rru_A3693 and Rru_A3694 are separated by 29 nucleotides
Rru_A3691: Rru_A3691 - Transport-associated (NCBI), at 4,237,401 to 4,238,036
_A3691
Rru_A3692: Rru_A3692 - Protein of unknown function UPF0102 (NCBI), at 4,238,066 to 4,238,443
_A3692
Rru_A3693: Rru_A3693 - Protein of unknown function UPF0011 (NCBI), at 4,238,440 to 4,239,363
_A3693
Rru_A3694: Rru_A3694 - hypothetical protein (NCBI), at 4,239,393 to 4,240,619
_A3694
Position (kb) 4238
4239
4240 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4237.471 kb on + strand, within Rru_A3691 at 4237.472 kb on - strand, within Rru_A3691 at 4237.552 kb on + strand, within Rru_A3691 at 4237.552 kb on + strand, within Rru_A3691 at 4237.552 kb on + strand, within Rru_A3691 at 4237.552 kb on + strand, within Rru_A3691 at 4237.553 kb on - strand, within Rru_A3691 at 4237.771 kb on - strand, within Rru_A3691 at 4237.771 kb on - strand, within Rru_A3691 at 4237.778 kb on + strand, within Rru_A3691 at 4237.778 kb on + strand, within Rru_A3691 at 4237.779 kb on - strand, within Rru_A3691 at 4237.779 kb on - strand, within Rru_A3691 at 4237.779 kb on - strand, within Rru_A3691 at 4237.780 kb on + strand, within Rru_A3691 at 4237.780 kb on + strand, within Rru_A3691 at 4237.780 kb on + strand, within Rru_A3691 at 4237.780 kb on + strand, within Rru_A3691 at 4237.780 kb on + strand, within Rru_A3691 at 4237.781 kb on - strand, within Rru_A3691 at 4237.781 kb on - strand, within Rru_A3691 at 4237.781 kb on - strand, within Rru_A3691 at 4237.781 kb on - strand, within Rru_A3691 at 4238.067 kb on + strand at 4238.067 kb on + strand at 4238.067 kb on + strand at 4238.068 kb on - strand at 4238.302 kb on + strand, within Rru_A3692 at 4238.302 kb on + strand, within Rru_A3692 at 4238.303 kb on - strand, within Rru_A3692 at 4238.303 kb on - strand, within Rru_A3692 at 4238.384 kb on + strand, within Rru_A3692 at 4238.384 kb on + strand, within Rru_A3692 at 4238.384 kb on + strand, within Rru_A3692 at 4238.385 kb on - strand, within Rru_A3692 at 4238.385 kb on - strand, within Rru_A3692 at 4238.385 kb on - strand, within Rru_A3692 at 4238.706 kb on + strand, within Rru_A3693 at 4238.707 kb on - strand, within Rru_A3693 at 4238.725 kb on + strand, within Rru_A3693 at 4239.133 kb on - strand, within Rru_A3693 at 4239.333 kb on + strand at 4239.333 kb on + strand at 4239.333 kb on + strand at 4239.334 kb on - strand at 4239.334 kb on - strand at 4239.349 kb on + strand at 4239.349 kb on + strand at 4239.507 kb on + strand at 4239.507 kb on + strand at 4239.507 kb on + strand at 4239.508 kb on - strand at 4239.508 kb on - strand at 4239.721 kb on - strand, within Rru_A3694 at 4240.080 kb on + strand, within Rru_A3694 at 4240.083 kb on + strand, within Rru_A3694 at 4240.083 kb on + strand, within Rru_A3694 at 4240.350 kb on + strand, within Rru_A3694 at 4240.362 kb on + strand, within Rru_A3694 at 4240.362 kb on + strand, within Rru_A3694 at 4240.362 kb on + strand, within Rru_A3694 at 4240.363 kb on - strand, within Rru_A3694 at 4240.363 kb on - strand, within Rru_A3694
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich remove 4,237,471 + Rru_A3691 0.11 +1.0 4,237,472 - Rru_A3691 0.11 -1.1 4,237,552 + Rru_A3691 0.24 -0.3 4,237,552 + Rru_A3691 0.24 -0.4 4,237,552 + Rru_A3691 0.24 +1.0 4,237,552 + Rru_A3691 0.24 +0.2 4,237,553 - Rru_A3691 0.24 -0.9 4,237,771 - Rru_A3691 0.58 -0.3 4,237,771 - Rru_A3691 0.58 +0.5 4,237,778 + Rru_A3691 0.59 -0.5 4,237,778 + Rru_A3691 0.59 +0.1 4,237,779 - Rru_A3691 0.59 -0.4 4,237,779 - Rru_A3691 0.59 +0.5 4,237,779 - Rru_A3691 0.59 -2.1 4,237,780 + Rru_A3691 0.60 +0.4 4,237,780 + Rru_A3691 0.60 +1.4 4,237,780 + Rru_A3691 0.60 +1.4 4,237,780 + Rru_A3691 0.60 -0.2 4,237,780 + Rru_A3691 0.60 +0.1 4,237,781 - Rru_A3691 0.60 -1.2 4,237,781 - Rru_A3691 0.60 -1.1 4,237,781 - Rru_A3691 0.60 +0.2 4,237,781 - Rru_A3691 0.60 +0.1 4,238,067 + +0.1 4,238,067 + -0.3 4,238,067 + -0.4 4,238,068 - -0.1 4,238,302 + Rru_A3692 0.62 +0.1 4,238,302 + Rru_A3692 0.62 -0.1 4,238,303 - Rru_A3692 0.63 +1.4 4,238,303 - Rru_A3692 0.63 -0.8 4,238,384 + Rru_A3692 0.84 +0.5 4,238,384 + Rru_A3692 0.84 -0.1 4,238,384 + Rru_A3692 0.84 +1.1 4,238,385 - Rru_A3692 0.84 -0.9 4,238,385 - Rru_A3692 0.84 -0.2 4,238,385 - Rru_A3692 0.84 -0.4 4,238,706 + Rru_A3693 0.29 -1.2 4,238,707 - Rru_A3693 0.29 -0.9 4,238,725 + Rru_A3693 0.31 +0.7 4,239,133 - Rru_A3693 0.75 -1.7 4,239,333 + -0.6 4,239,333 + -1.5 4,239,333 + +0.7 4,239,334 - +1.9 4,239,334 - -0.7 4,239,349 + -0.6 4,239,349 + -0.2 4,239,507 + -0.1 4,239,507 + -0.1 4,239,507 + -0.3 4,239,508 - -0.9 4,239,508 - -0.5 4,239,721 - Rru_A3694 0.27 -0.8 4,240,080 + Rru_A3694 0.56 -0.4 4,240,083 + Rru_A3694 0.56 -0.7 4,240,083 + Rru_A3694 0.56 -1.5 4,240,350 + Rru_A3694 0.78 -0.2 4,240,362 + Rru_A3694 0.79 -0.2 4,240,362 + Rru_A3694 0.79 -0.4 4,240,362 + Rru_A3694 0.79 -1.0 4,240,363 - Rru_A3694 0.79 -0.4 4,240,363 - Rru_A3694 0.79 -0.3
Or see this region's nucleotide sequence