Experiment: SMN_rich
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3680 and Rru_A3681 are separated by 326 nucleotides Rru_A3681 and Rru_A3682 are separated by 27 nucleotides Rru_A3682 and Rru_A3683 are separated by 12 nucleotides Rru_A3683 and Rru_A3684 are separated by 7 nucleotides
Rru_A3680: Rru_A3680 - Integral membrane protein TerC (NCBI), at 4,227,901 to 4,228,893
_A3680
Rru_A3681: Rru_A3681 - YceI (NCBI), at 4,229,220 to 4,229,825
_A3681
Rru_A3682: Rru_A3682 - Cytochrome B561 (NCBI), at 4,229,853 to 4,230,419
_A3682
Rru_A3683: Rru_A3683 - YceI (NCBI), at 4,230,432 to 4,231,010
_A3683
Rru_A3684: Rru_A3684 - Sulfotransferase (NCBI), at 4,231,018 to 4,232,646
_A3684
Position (kb) 4229
4230
4231 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4228.873 kb on + strand at 4228.873 kb on + strand at 4228.874 kb on - strand at 4229.325 kb on + strand, within Rru_A3681 at 4229.325 kb on + strand, within Rru_A3681 at 4229.326 kb on - strand, within Rru_A3681 at 4229.326 kb on - strand, within Rru_A3681 at 4229.327 kb on + strand, within Rru_A3681 at 4229.327 kb on + strand, within Rru_A3681 at 4229.328 kb on - strand, within Rru_A3681 at 4229.328 kb on - strand, within Rru_A3681 at 4229.763 kb on + strand, within Rru_A3681 at 4229.764 kb on - strand, within Rru_A3681 at 4229.823 kb on + strand at 4229.823 kb on + strand at 4229.823 kb on + strand at 4229.839 kb on + strand at 4230.011 kb on + strand, within Rru_A3682 at 4230.012 kb on - strand, within Rru_A3682 at 4230.012 kb on - strand, within Rru_A3682 at 4230.147 kb on + strand, within Rru_A3682 at 4230.148 kb on - strand, within Rru_A3682 at 4230.375 kb on - strand at 4230.801 kb on + strand, within Rru_A3683 at 4230.801 kb on + strand, within Rru_A3683 at 4230.802 kb on - strand, within Rru_A3683 at 4231.313 kb on + strand, within Rru_A3684 at 4231.313 kb on + strand, within Rru_A3684 at 4231.314 kb on - strand, within Rru_A3684 at 4231.314 kb on - strand, within Rru_A3684 at 4231.314 kb on - strand, within Rru_A3684 at 4231.316 kb on + strand, within Rru_A3684 at 4231.317 kb on - strand, within Rru_A3684
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich remove 4,228,873 + -0.1 4,228,873 + +2.4 4,228,874 - +0.1 4,229,325 + Rru_A3681 0.17 +0.4 4,229,325 + Rru_A3681 0.17 +1.6 4,229,326 - Rru_A3681 0.17 -0.1 4,229,326 - Rru_A3681 0.17 +0.0 4,229,327 + Rru_A3681 0.18 -0.8 4,229,327 + Rru_A3681 0.18 -1.2 4,229,328 - Rru_A3681 0.18 -2.9 4,229,328 - Rru_A3681 0.18 -0.1 4,229,763 + Rru_A3681 0.90 +0.1 4,229,764 - Rru_A3681 0.90 +0.2 4,229,823 + -0.5 4,229,823 + -0.2 4,229,823 + +0.1 4,229,839 + +1.4 4,230,011 + Rru_A3682 0.28 +1.4 4,230,012 - Rru_A3682 0.28 -0.2 4,230,012 - Rru_A3682 0.28 -0.8 4,230,147 + Rru_A3682 0.52 -1.4 4,230,148 - Rru_A3682 0.52 -1.0 4,230,375 - -0.5 4,230,801 + Rru_A3683 0.64 +0.4 4,230,801 + Rru_A3683 0.64 -0.3 4,230,802 - Rru_A3683 0.64 +1.4 4,231,313 + Rru_A3684 0.18 +0.4 4,231,313 + Rru_A3684 0.18 -0.4 4,231,314 - Rru_A3684 0.18 -0.8 4,231,314 - Rru_A3684 0.18 -0.7 4,231,314 - Rru_A3684 0.18 -0.4 4,231,316 + Rru_A3684 0.18 -0.1 4,231,317 - Rru_A3684 0.18 -1.0
Or see this region's nucleotide sequence