Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2497

Experiment: SMN_rich

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2496 and Rru_A2497 are separated by 58 nucleotidesRru_A2497 and Rru_A2498 are separated by 303 nucleotides Rru_A2496: Rru_A2496 - Polysaccharide biosynthesis protein (NCBI), at 2,902,216 to 2,903,487 _A2496 Rru_A2497: Rru_A2497 - Peptide chain release factor 3 (NCBI), at 2,903,546 to 2,905,138 _A2497 Rru_A2498: Rru_A2498 - ABC transporter component (NCBI), at 2,905,442 to 2,906,425 _A2498 Position (kb) 2903 2904 2905 2906Strain fitness (log2 ratio) -3 -2 -1 0 1at 2902.734 kb on - strand, within Rru_A2496at 2902.749 kb on + strand, within Rru_A2496at 2902.883 kb on + strand, within Rru_A2496at 2902.883 kb on + strand, within Rru_A2496at 2903.019 kb on - strand, within Rru_A2496at 2903.273 kb on + strand, within Rru_A2496at 2903.569 kb on + strandat 2904.112 kb on + strand, within Rru_A2497at 2904.112 kb on + strand, within Rru_A2497at 2904.113 kb on - strand, within Rru_A2497at 2904.113 kb on - strand, within Rru_A2497at 2904.224 kb on - strand, within Rru_A2497at 2904.224 kb on - strand, within Rru_A2497at 2904.224 kb on - strand, within Rru_A2497at 2904.598 kb on - strand, within Rru_A2497at 2904.724 kb on + strand, within Rru_A2497at 2904.724 kb on + strand, within Rru_A2497at 2904.725 kb on - strand, within Rru_A2497at 2904.846 kb on + strand, within Rru_A2497at 2904.846 kb on + strand, within Rru_A2497at 2904.847 kb on - strand, within Rru_A2497at 2904.850 kb on + strand, within Rru_A2497at 2904.851 kb on - strand, within Rru_A2497at 2904.851 kb on - strand, within Rru_A2497at 2904.851 kb on - strand, within Rru_A2497at 2904.910 kb on - strand, within Rru_A2497at 2904.915 kb on + strand, within Rru_A2497at 2904.916 kb on - strand, within Rru_A2497at 2904.916 kb on - strand, within Rru_A2497at 2905.103 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich
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2,902,734 - Rru_A2496 0.41 -0.4
2,902,749 + Rru_A2496 0.42 -2.8
2,902,883 + Rru_A2496 0.52 +0.9
2,902,883 + Rru_A2496 0.52 -0.7
2,903,019 - Rru_A2496 0.63 -0.3
2,903,273 + Rru_A2496 0.83 -0.1
2,903,569 + +0.1
2,904,112 + Rru_A2497 0.36 -0.5
2,904,112 + Rru_A2497 0.36 -1.1
2,904,113 - Rru_A2497 0.36 -2.5
2,904,113 - Rru_A2497 0.36 -0.8
2,904,224 - Rru_A2497 0.43 +0.3
2,904,224 - Rru_A2497 0.43 +1.5
2,904,224 - Rru_A2497 0.43 -0.6
2,904,598 - Rru_A2497 0.66 +1.5
2,904,724 + Rru_A2497 0.74 -0.7
2,904,724 + Rru_A2497 0.74 -0.5
2,904,725 - Rru_A2497 0.74 -2.5
2,904,846 + Rru_A2497 0.82 -1.7
2,904,846 + Rru_A2497 0.82 -0.1
2,904,847 - Rru_A2497 0.82 +0.5
2,904,850 + Rru_A2497 0.82 -1.7
2,904,851 - Rru_A2497 0.82 -0.3
2,904,851 - Rru_A2497 0.82 +0.1
2,904,851 - Rru_A2497 0.82 -2.7
2,904,910 - Rru_A2497 0.86 -0.1
2,904,915 + Rru_A2497 0.86 -2.4
2,904,916 - Rru_A2497 0.86 -2.3
2,904,916 - Rru_A2497 0.86 -0.1
2,905,103 - +1.5

Or see this region's nucleotide sequence