Experiment: SMN_rich
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2162 and Rru_A2163 overlap by 26 nucleotides Rru_A2163 and Rru_A2164 overlap by 4 nucleotides Rru_A2164 and Rru_A2165 overlap by 4 nucleotides Rru_A2165 and Rru_A2166 are separated by 13 nucleotides
Rru_A2162: Rru_A2162 - Phosphohistidine Phosphatase, SixA (NCBI), at 2,511,878 to 2,512,390
_A2162
Rru_A2163: Rru_A2163 - conserved hypothetical protein RP631 (NCBI), at 2,512,365 to 2,513,051
_A2163
Rru_A2164: Rru_A2164 - Protein of unknown function UPF0118 (NCBI), at 2,513,048 to 2,514,157
_A2164
Rru_A2165: Rru_A2165 - CDP-alcohol phosphatidyltransferase (NCBI), at 2,514,154 to 2,514,777
_A2165
Rru_A2166: Rru_A2166 - hypothetical protein (NCBI), at 2,514,791 to 2,516,128
_A2166
Position (kb)
2513
2514
2515 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2512.088 kb on + strand, within Rru_A2162 at 2512.089 kb on - strand, within Rru_A2162 at 2512.106 kb on + strand, within Rru_A2162 at 2512.121 kb on + strand, within Rru_A2162 at 2512.121 kb on + strand, within Rru_A2162 at 2512.121 kb on + strand, within Rru_A2162 at 2512.121 kb on + strand, within Rru_A2162 at 2512.122 kb on - strand, within Rru_A2162 at 2512.122 kb on - strand, within Rru_A2162 at 2512.122 kb on - strand, within Rru_A2162 at 2512.122 kb on - strand, within Rru_A2162 at 2512.388 kb on + strand at 2512.389 kb on - strand at 2512.404 kb on - strand at 2512.818 kb on + strand, within Rru_A2163 at 2512.818 kb on + strand, within Rru_A2163 at 2512.819 kb on - strand, within Rru_A2163 at 2512.819 kb on - strand, within Rru_A2163 at 2513.115 kb on + strand at 2513.115 kb on + strand at 2513.296 kb on - strand, within Rru_A2164 at 2513.296 kb on - strand, within Rru_A2164 at 2513.418 kb on + strand, within Rru_A2164 at 2513.418 kb on + strand, within Rru_A2164 at 2513.419 kb on - strand, within Rru_A2164 at 2513.500 kb on - strand, within Rru_A2164 at 2513.599 kb on - strand, within Rru_A2164 at 2513.599 kb on - strand, within Rru_A2164 at 2513.656 kb on + strand, within Rru_A2164 at 2513.657 kb on - strand, within Rru_A2164 at 2513.657 kb on - strand, within Rru_A2164 at 2513.657 kb on - strand, within Rru_A2164 at 2513.658 kb on + strand, within Rru_A2164 at 2513.659 kb on - strand, within Rru_A2164 at 2513.659 kb on - strand, within Rru_A2164 at 2513.659 kb on - strand, within Rru_A2164 at 2513.833 kb on + strand, within Rru_A2164 at 2513.833 kb on + strand, within Rru_A2164 at 2513.885 kb on - strand, within Rru_A2164 at 2513.885 kb on - strand, within Rru_A2164 at 2514.043 kb on - strand, within Rru_A2164 at 2514.379 kb on - strand, within Rru_A2165
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich remove 2,512,088 + Rru_A2162 0.41 +0.6 2,512,089 - Rru_A2162 0.41 -0.0 2,512,106 + Rru_A2162 0.44 +0.5 2,512,121 + Rru_A2162 0.47 -0.2 2,512,121 + Rru_A2162 0.47 -0.3 2,512,121 + Rru_A2162 0.47 +0.1 2,512,121 + Rru_A2162 0.47 +0.1 2,512,122 - Rru_A2162 0.48 +0.1 2,512,122 - Rru_A2162 0.48 +0.1 2,512,122 - Rru_A2162 0.48 -1.0 2,512,122 - Rru_A2162 0.48 +0.0 2,512,388 + -0.9 2,512,389 - -0.6 2,512,404 - +1.6 2,512,818 + Rru_A2163 0.66 +1.6 2,512,818 + Rru_A2163 0.66 -2.5 2,512,819 - Rru_A2163 0.66 +1.6 2,512,819 - Rru_A2163 0.66 +1.0 2,513,115 + -0.8 2,513,115 + +1.6 2,513,296 - Rru_A2164 0.22 +1.6 2,513,296 - Rru_A2164 0.22 -1.9 2,513,418 + Rru_A2164 0.33 +1.6 2,513,418 + Rru_A2164 0.33 +0.6 2,513,419 - Rru_A2164 0.33 -0.8 2,513,500 - Rru_A2164 0.41 -1.6 2,513,599 - Rru_A2164 0.50 -0.8 2,513,599 - Rru_A2164 0.50 +0.6 2,513,656 + Rru_A2164 0.55 +2.6 2,513,657 - Rru_A2164 0.55 -0.6 2,513,657 - Rru_A2164 0.55 +0.6 2,513,657 - Rru_A2164 0.55 +1.1 2,513,658 + Rru_A2164 0.55 +1.6 2,513,659 - Rru_A2164 0.55 -0.7 2,513,659 - Rru_A2164 0.55 +0.8 2,513,659 - Rru_A2164 0.55 -0.3 2,513,833 + Rru_A2164 0.71 +1.6 2,513,833 + Rru_A2164 0.71 +1.6 2,513,885 - Rru_A2164 0.75 -1.0 2,513,885 - Rru_A2164 0.75 -1.8 2,514,043 - Rru_A2164 0.90 -2.6 2,514,379 - Rru_A2165 0.36 -0.8
Or see this region's nucleotide sequence