Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2164

Experiment: SMN_rich

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2162 and Rru_A2163 overlap by 26 nucleotidesRru_A2163 and Rru_A2164 overlap by 4 nucleotidesRru_A2164 and Rru_A2165 overlap by 4 nucleotidesRru_A2165 and Rru_A2166 are separated by 13 nucleotides Rru_A2162: Rru_A2162 - Phosphohistidine Phosphatase, SixA (NCBI), at 2,511,878 to 2,512,390 _A2162 Rru_A2163: Rru_A2163 - conserved hypothetical protein RP631 (NCBI), at 2,512,365 to 2,513,051 _A2163 Rru_A2164: Rru_A2164 - Protein of unknown function UPF0118 (NCBI), at 2,513,048 to 2,514,157 _A2164 Rru_A2165: Rru_A2165 - CDP-alcohol phosphatidyltransferase (NCBI), at 2,514,154 to 2,514,777 _A2165 Rru_A2166: Rru_A2166 - hypothetical protein (NCBI), at 2,514,791 to 2,516,128 _A2166 Position (kb) 2513 2514 2515Strain fitness (log2 ratio) -2 -1 0 1 2at 2512.088 kb on + strand, within Rru_A2162at 2512.089 kb on - strand, within Rru_A2162at 2512.106 kb on + strand, within Rru_A2162at 2512.121 kb on + strand, within Rru_A2162at 2512.121 kb on + strand, within Rru_A2162at 2512.121 kb on + strand, within Rru_A2162at 2512.121 kb on + strand, within Rru_A2162at 2512.122 kb on - strand, within Rru_A2162at 2512.122 kb on - strand, within Rru_A2162at 2512.122 kb on - strand, within Rru_A2162at 2512.122 kb on - strand, within Rru_A2162at 2512.388 kb on + strandat 2512.389 kb on - strandat 2512.404 kb on - strandat 2512.818 kb on + strand, within Rru_A2163at 2512.818 kb on + strand, within Rru_A2163at 2512.819 kb on - strand, within Rru_A2163at 2512.819 kb on - strand, within Rru_A2163at 2513.115 kb on + strandat 2513.115 kb on + strandat 2513.296 kb on - strand, within Rru_A2164at 2513.296 kb on - strand, within Rru_A2164at 2513.418 kb on + strand, within Rru_A2164at 2513.418 kb on + strand, within Rru_A2164at 2513.419 kb on - strand, within Rru_A2164at 2513.500 kb on - strand, within Rru_A2164at 2513.599 kb on - strand, within Rru_A2164at 2513.599 kb on - strand, within Rru_A2164at 2513.656 kb on + strand, within Rru_A2164at 2513.657 kb on - strand, within Rru_A2164at 2513.657 kb on - strand, within Rru_A2164at 2513.657 kb on - strand, within Rru_A2164at 2513.658 kb on + strand, within Rru_A2164at 2513.659 kb on - strand, within Rru_A2164at 2513.659 kb on - strand, within Rru_A2164at 2513.659 kb on - strand, within Rru_A2164at 2513.833 kb on + strand, within Rru_A2164at 2513.833 kb on + strand, within Rru_A2164at 2513.885 kb on - strand, within Rru_A2164at 2513.885 kb on - strand, within Rru_A2164at 2514.043 kb on - strand, within Rru_A2164at 2514.379 kb on - strand, within Rru_A2165

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich
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2,512,088 + Rru_A2162 0.41 +0.6
2,512,089 - Rru_A2162 0.41 -0.0
2,512,106 + Rru_A2162 0.44 +0.5
2,512,121 + Rru_A2162 0.47 -0.2
2,512,121 + Rru_A2162 0.47 -0.3
2,512,121 + Rru_A2162 0.47 +0.1
2,512,121 + Rru_A2162 0.47 +0.1
2,512,122 - Rru_A2162 0.48 +0.1
2,512,122 - Rru_A2162 0.48 +0.1
2,512,122 - Rru_A2162 0.48 -1.0
2,512,122 - Rru_A2162 0.48 +0.0
2,512,388 + -0.9
2,512,389 - -0.6
2,512,404 - +1.6
2,512,818 + Rru_A2163 0.66 +1.6
2,512,818 + Rru_A2163 0.66 -2.5
2,512,819 - Rru_A2163 0.66 +1.6
2,512,819 - Rru_A2163 0.66 +1.0
2,513,115 + -0.8
2,513,115 + +1.6
2,513,296 - Rru_A2164 0.22 +1.6
2,513,296 - Rru_A2164 0.22 -1.9
2,513,418 + Rru_A2164 0.33 +1.6
2,513,418 + Rru_A2164 0.33 +0.6
2,513,419 - Rru_A2164 0.33 -0.8
2,513,500 - Rru_A2164 0.41 -1.6
2,513,599 - Rru_A2164 0.50 -0.8
2,513,599 - Rru_A2164 0.50 +0.6
2,513,656 + Rru_A2164 0.55 +2.6
2,513,657 - Rru_A2164 0.55 -0.6
2,513,657 - Rru_A2164 0.55 +0.6
2,513,657 - Rru_A2164 0.55 +1.1
2,513,658 + Rru_A2164 0.55 +1.6
2,513,659 - Rru_A2164 0.55 -0.7
2,513,659 - Rru_A2164 0.55 +0.8
2,513,659 - Rru_A2164 0.55 -0.3
2,513,833 + Rru_A2164 0.71 +1.6
2,513,833 + Rru_A2164 0.71 +1.6
2,513,885 - Rru_A2164 0.75 -1.0
2,513,885 - Rru_A2164 0.75 -1.8
2,514,043 - Rru_A2164 0.90 -2.6
2,514,379 - Rru_A2165 0.36 -0.8

Or see this region's nucleotide sequence