Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1768

Experiment: SMN_rich

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1767 and Rru_A1768 overlap by 4 nucleotidesRru_A1768 and Rru_A1769 are separated by 25 nucleotidesRru_A1769 and Rru_A1770 overlap by 1 nucleotides Rru_A1767: Rru_A1767 - peptidase M23B (NCBI), at 2,059,422 to 2,060,819 _A1767 Rru_A1768: Rru_A1768 - Protein-L-isoaspartate(D-aspartate) O-methyltransferase (NCBI), at 2,060,816 to 2,061,475 _A1768 Rru_A1769: Rru_A1769 - Acid phosphatase (NCBI), at 2,061,501 to 2,062,286 _A1769 Rru_A1770: Rru_A1770 - Serine--tRNA ligase (NCBI), at 2,062,286 to 2,063,557 _A1770 Position (kb) 2060 2061 2062Strain fitness (log2 ratio) -2 -1 0 1at 2060.413 kb on + strand, within Rru_A1767at 2060.413 kb on + strand, within Rru_A1767at 2060.558 kb on - strand, within Rru_A1767at 2060.584 kb on + strand, within Rru_A1767at 2060.675 kb on + strand, within Rru_A1767at 2060.722 kb on - strandat 2060.724 kb on - strandat 2060.724 kb on - strandat 2060.724 kb on - strandat 2060.724 kb on - strandat 2060.724 kb on - strandat 2060.754 kb on - strandat 2060.754 kb on - strandat 2060.754 kb on - strandat 2060.756 kb on - strandat 2061.169 kb on + strand, within Rru_A1768at 2061.170 kb on - strand, within Rru_A1768at 2061.171 kb on + strand, within Rru_A1768at 2061.172 kb on - strand, within Rru_A1768at 2061.172 kb on - strand, within Rru_A1768at 2061.339 kb on + strand, within Rru_A1768at 2061.339 kb on + strand, within Rru_A1768at 2061.950 kb on - strand, within Rru_A1769

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich
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2,060,413 + Rru_A1767 0.71 -0.7
2,060,413 + Rru_A1767 0.71 -0.7
2,060,558 - Rru_A1767 0.81 -0.6
2,060,584 + Rru_A1767 0.83 +0.2
2,060,675 + Rru_A1767 0.90 -1.0
2,060,722 - -1.2
2,060,724 - -0.3
2,060,724 - +0.6
2,060,724 - -0.1
2,060,724 - -2.3
2,060,724 - +0.1
2,060,754 - +0.1
2,060,754 - -0.5
2,060,754 - +0.1
2,060,756 - -0.7
2,061,169 + Rru_A1768 0.53 -2.2
2,061,170 - Rru_A1768 0.54 +0.9
2,061,171 + Rru_A1768 0.54 -0.7
2,061,172 - Rru_A1768 0.54 -0.6
2,061,172 - Rru_A1768 0.54 -0.2
2,061,339 + Rru_A1768 0.79 -0.1
2,061,339 + Rru_A1768 0.79 +1.6
2,061,950 - Rru_A1769 0.57 -1.3

Or see this region's nucleotide sequence