Experiment: SMN_rich
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1676 and Rru_A1677 are separated by 2 nucleotides Rru_A1677 and Rru_A1678 are separated by 98 nucleotides
Rru_A1676: Rru_A1676 - Dihydrouridine synthase TIM-barrel protein nifR3 (NCBI), at 1,965,546 to 1,966,634
_A1676
Rru_A1677: Rru_A1677 - Signal transduction histidine kinase, nitrogen specific, NtrB (NCBI), at 1,966,637 to 1,967,737
_A1677
Rru_A1678: Rru_A1678 - Nitrogen Metabolism Transcriptional Regulator, NtrC, Fis Family (NCBI), at 1,967,836 to 1,969,281
_A1678
Position (kb) 1966
1967
1968 Strain fitness (log2 ratio) -2
-1
0
1 at 1965.645 kb on + strand at 1965.645 kb on + strand at 1965.646 kb on - strand at 1966.092 kb on + strand, within Rru_A1676 at 1966.092 kb on + strand, within Rru_A1676 at 1966.092 kb on + strand, within Rru_A1676 at 1966.092 kb on + strand, within Rru_A1676 at 1966.092 kb on + strand, within Rru_A1676 at 1966.092 kb on + strand, within Rru_A1676 at 1966.092 kb on + strand, within Rru_A1676 at 1966.092 kb on + strand, within Rru_A1676 at 1966.092 kb on + strand, within Rru_A1676 at 1966.092 kb on + strand, within Rru_A1676 at 1966.093 kb on - strand, within Rru_A1676 at 1966.093 kb on - strand, within Rru_A1676 at 1966.093 kb on - strand, within Rru_A1676 at 1966.093 kb on - strand, within Rru_A1676 at 1966.394 kb on + strand, within Rru_A1676 at 1966.394 kb on + strand, within Rru_A1676 at 1966.412 kb on + strand, within Rru_A1676 at 1966.412 kb on + strand, within Rru_A1676 at 1966.423 kb on - strand, within Rru_A1676 at 1966.464 kb on + strand, within Rru_A1676 at 1966.464 kb on + strand, within Rru_A1676 at 1966.464 kb on + strand, within Rru_A1676 at 1966.465 kb on - strand, within Rru_A1676 at 1966.465 kb on - strand, within Rru_A1676 at 1966.466 kb on + strand, within Rru_A1676 at 1966.466 kb on + strand, within Rru_A1676 at 1966.467 kb on - strand, within Rru_A1676 at 1966.898 kb on + strand, within Rru_A1677 at 1967.345 kb on + strand, within Rru_A1677 at 1967.345 kb on + strand, within Rru_A1677 at 1967.345 kb on + strand, within Rru_A1677 at 1967.345 kb on + strand, within Rru_A1677 at 1967.346 kb on - strand, within Rru_A1677 at 1967.346 kb on - strand, within Rru_A1677 at 1967.346 kb on - strand, within Rru_A1677 at 1967.346 kb on - strand, within Rru_A1677 at 1967.346 kb on - strand, within Rru_A1677 at 1967.472 kb on - strand, within Rru_A1677 at 1967.472 kb on - strand, within Rru_A1677 at 1967.490 kb on + strand, within Rru_A1677 at 1967.490 kb on + strand, within Rru_A1677 at 1967.551 kb on + strand, within Rru_A1677 at 1967.551 kb on + strand, within Rru_A1677 at 1967.561 kb on - strand, within Rru_A1677 at 1968.225 kb on + strand, within Rru_A1678 at 1968.283 kb on + strand, within Rru_A1678 at 1968.283 kb on + strand, within Rru_A1678 at 1968.283 kb on + strand, within Rru_A1678 at 1968.283 kb on + strand, within Rru_A1678 at 1968.383 kb on - strand, within Rru_A1678 at 1968.613 kb on + strand, within Rru_A1678 at 1968.614 kb on - strand, within Rru_A1678 at 1968.693 kb on + strand, within Rru_A1678 at 1968.727 kb on + strand, within Rru_A1678
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich remove 1,965,645 + -0.4 1,965,645 + -1.1 1,965,646 - +1.6 1,966,092 + Rru_A1676 0.50 -0.0 1,966,092 + Rru_A1676 0.50 -0.3 1,966,092 + Rru_A1676 0.50 -0.3 1,966,092 + Rru_A1676 0.50 +1.6 1,966,092 + Rru_A1676 0.50 +0.4 1,966,092 + Rru_A1676 0.50 -0.7 1,966,092 + Rru_A1676 0.50 +0.4 1,966,092 + Rru_A1676 0.50 +0.5 1,966,092 + Rru_A1676 0.50 +0.4 1,966,092 + Rru_A1676 0.50 -0.6 1,966,093 - Rru_A1676 0.50 -0.7 1,966,093 - Rru_A1676 0.50 +1.6 1,966,093 - Rru_A1676 0.50 -0.7 1,966,093 - Rru_A1676 0.50 +1.6 1,966,394 + Rru_A1676 0.78 -0.6 1,966,394 + Rru_A1676 0.78 +0.2 1,966,412 + Rru_A1676 0.80 -0.8 1,966,412 + Rru_A1676 0.80 -1.0 1,966,423 - Rru_A1676 0.81 -1.1 1,966,464 + Rru_A1676 0.84 -0.5 1,966,464 + Rru_A1676 0.84 -0.7 1,966,464 + Rru_A1676 0.84 -0.2 1,966,465 - Rru_A1676 0.84 +0.3 1,966,465 - Rru_A1676 0.84 +1.6 1,966,466 + Rru_A1676 0.84 -0.9 1,966,466 + Rru_A1676 0.84 -0.6 1,966,467 - Rru_A1676 0.85 -0.2 1,966,898 + Rru_A1677 0.24 -1.9 1,967,345 + Rru_A1677 0.64 -1.6 1,967,345 + Rru_A1677 0.64 -1.6 1,967,345 + Rru_A1677 0.64 -1.4 1,967,345 + Rru_A1677 0.64 -0.5 1,967,346 - Rru_A1677 0.64 -0.7 1,967,346 - Rru_A1677 0.64 +0.6 1,967,346 - Rru_A1677 0.64 +1.6 1,967,346 - Rru_A1677 0.64 +1.6 1,967,346 - Rru_A1677 0.64 +0.6 1,967,472 - Rru_A1677 0.76 +0.0 1,967,472 - Rru_A1677 0.76 +0.6 1,967,490 + Rru_A1677 0.77 -2.4 1,967,490 + Rru_A1677 0.77 -0.2 1,967,551 + Rru_A1677 0.83 +0.0 1,967,551 + Rru_A1677 0.83 +0.6 1,967,561 - Rru_A1677 0.84 -1.4 1,968,225 + Rru_A1678 0.27 +0.4 1,968,283 + Rru_A1678 0.31 +0.0 1,968,283 + Rru_A1678 0.31 -0.4 1,968,283 + Rru_A1678 0.31 +1.6 1,968,283 + Rru_A1678 0.31 +1.2 1,968,383 - Rru_A1678 0.38 +1.6 1,968,613 + Rru_A1678 0.54 -1.8 1,968,614 - Rru_A1678 0.54 +0.0 1,968,693 + Rru_A1678 0.59 -1.2 1,968,727 + Rru_A1678 0.62 +0.6
Or see this region's nucleotide sequence