Experiment: SMN_rich
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0787 and Rru_A0788 are separated by 149 nucleotides Rru_A0788 and Rru_A0789 overlap by 32 nucleotides Rru_A0789 and Rru_A0790 are separated by 26 nucleotides
Rru_A0787: Rru_A0787 - cysteine synthase (NCBI), at 939,595 to 940,959
_A0787
Rru_A0788: Rru_A0788 - ABC transporter component (NCBI), at 941,109 to 942,164
_A0788
Rru_A0789: Rru_A0789 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 942,133 to 942,810
_A0789
Rru_A0790: Rru_A0790 - Phenylacetate--CoA ligase (NCBI), at 942,837 to 944,213
_A0790
Position (kb) 941
942
943 Strain fitness (log2 ratio) -2
-1
0
1 at 940.109 kb on + strand, within Rru_A0787 at 940.215 kb on + strand, within Rru_A0787 at 940.215 kb on + strand, within Rru_A0787 at 940.217 kb on + strand, within Rru_A0787 at 940.217 kb on + strand, within Rru_A0787 at 940.217 kb on + strand, within Rru_A0787 at 940.217 kb on + strand, within Rru_A0787 at 940.217 kb on + strand, within Rru_A0787 at 940.217 kb on + strand, within Rru_A0787 at 940.218 kb on - strand, within Rru_A0787 at 940.218 kb on - strand, within Rru_A0787 at 940.218 kb on - strand, within Rru_A0787 at 940.322 kb on + strand, within Rru_A0787 at 940.322 kb on + strand, within Rru_A0787 at 940.322 kb on + strand, within Rru_A0787 at 940.322 kb on + strand, within Rru_A0787 at 940.322 kb on + strand, within Rru_A0787 at 940.323 kb on - strand, within Rru_A0787 at 940.581 kb on - strand, within Rru_A0787 at 940.583 kb on + strand, within Rru_A0787 at 940.583 kb on + strand, within Rru_A0787 at 940.583 kb on + strand, within Rru_A0787 at 941.025 kb on + strand at 941.025 kb on + strand at 941.025 kb on + strand at 941.025 kb on + strand at 941.025 kb on + strand at 941.031 kb on + strand at 941.517 kb on + strand, within Rru_A0788 at 942.015 kb on + strand, within Rru_A0788 at 942.016 kb on - strand, within Rru_A0788 at 942.093 kb on + strand at 942.673 kb on + strand, within Rru_A0789 at 942.808 kb on + strand at 942.809 kb on - strand at 942.901 kb on - strand at 942.981 kb on + strand, within Rru_A0790 at 942.981 kb on + strand, within Rru_A0790
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich remove 940,109 + Rru_A0787 0.38 -0.9 940,215 + Rru_A0787 0.45 -0.3 940,215 + Rru_A0787 0.45 -0.4 940,217 + Rru_A0787 0.46 -0.3 940,217 + Rru_A0787 0.46 -0.3 940,217 + Rru_A0787 0.46 -0.5 940,217 + Rru_A0787 0.46 +0.1 940,217 + Rru_A0787 0.46 +1.5 940,217 + Rru_A0787 0.46 -0.8 940,218 - Rru_A0787 0.46 -0.2 940,218 - Rru_A0787 0.46 +0.3 940,218 - Rru_A0787 0.46 -0.1 940,322 + Rru_A0787 0.53 -0.0 940,322 + Rru_A0787 0.53 -0.6 940,322 + Rru_A0787 0.53 -0.1 940,322 + Rru_A0787 0.53 -0.3 940,322 + Rru_A0787 0.53 -0.3 940,323 - Rru_A0787 0.53 +0.1 940,581 - Rru_A0787 0.72 +0.5 940,583 + Rru_A0787 0.72 +0.6 940,583 + Rru_A0787 0.72 -0.1 940,583 + Rru_A0787 0.72 +1.5 941,025 + +0.2 941,025 + -0.6 941,025 + -0.1 941,025 + +0.0 941,025 + +1.1 941,031 + -0.4 941,517 + Rru_A0788 0.39 -0.5 942,015 + Rru_A0788 0.86 -1.9 942,016 - Rru_A0788 0.86 -0.2 942,093 + +0.5 942,673 + Rru_A0789 0.80 +0.5 942,808 + -0.4 942,809 - -0.1 942,901 - -0.0 942,981 + Rru_A0790 0.10 -0.5 942,981 + Rru_A0790 0.10 -0.0
Or see this region's nucleotide sequence