Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0770

Experiment: SMN_rich

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0769 and Rru_A0770 are separated by 317 nucleotides Rru_A0769: Rru_A0769 - extracellular solute-binding protein, family 1 (NCBI), at 907,223 to 908,266 _A0769 Rru_A0770: Rru_A0770 - Peptidase M23B (NCBI), at 908,584 to 910,185 _A0770 Position (kb) 908 909 910 911Strain fitness (log2 ratio) -2 -1 0 1at 907.590 kb on + strand, within Rru_A0769at 907.591 kb on - strand, within Rru_A0769at 907.593 kb on + strand, within Rru_A0769at 907.593 kb on + strand, within Rru_A0769at 907.593 kb on + strand, within Rru_A0769at 907.594 kb on - strand, within Rru_A0769at 907.761 kb on + strand, within Rru_A0769at 907.762 kb on - strand, within Rru_A0769at 907.762 kb on - strand, within Rru_A0769at 907.825 kb on - strand, within Rru_A0769at 907.825 kb on - strand, within Rru_A0769at 907.825 kb on - strand, within Rru_A0769at 907.933 kb on + strand, within Rru_A0769at 907.933 kb on + strand, within Rru_A0769at 907.934 kb on - strand, within Rru_A0769at 907.934 kb on - strand, within Rru_A0769at 907.934 kb on - strand, within Rru_A0769at 908.163 kb on + strandat 908.163 kb on + strandat 908.163 kb on + strandat 908.163 kb on + strandat 908.163 kb on + strandat 908.163 kb on + strandat 908.163 kb on + strandat 908.163 kb on + strandat 908.163 kb on + strandat 908.164 kb on - strandat 908.164 kb on - strandat 908.164 kb on - strandat 908.164 kb on - strandat 908.164 kb on - strandat 908.164 kb on - strandat 908.271 kb on + strandat 908.271 kb on + strandat 908.271 kb on + strandat 908.324 kb on - strandat 908.324 kb on - strandat 908.585 kb on + strandat 908.585 kb on + strandat 908.585 kb on + strandat 908.585 kb on + strandat 908.586 kb on - strandat 908.856 kb on + strand, within Rru_A0770at 908.856 kb on + strand, within Rru_A0770at 908.864 kb on + strand, within Rru_A0770at 908.865 kb on - strand, within Rru_A0770at 908.865 kb on - strand, within Rru_A0770at 908.876 kb on + strand, within Rru_A0770at 908.877 kb on - strand, within Rru_A0770at 908.903 kb on + strand, within Rru_A0770at 909.000 kb on + strand, within Rru_A0770at 909.000 kb on + strand, within Rru_A0770at 909.001 kb on - strand, within Rru_A0770at 909.120 kb on - strand, within Rru_A0770at 909.120 kb on - strand, within Rru_A0770at 909.141 kb on + strand, within Rru_A0770at 909.142 kb on - strand, within Rru_A0770at 909.237 kb on - strand, within Rru_A0770at 909.237 kb on - strand, within Rru_A0770at 909.239 kb on + strand, within Rru_A0770at 909.240 kb on - strand, within Rru_A0770at 909.303 kb on - strand, within Rru_A0770at 909.308 kb on + strand, within Rru_A0770at 909.308 kb on + strand, within Rru_A0770at 909.308 kb on + strand, within Rru_A0770at 909.308 kb on + strand, within Rru_A0770at 910.045 kb on - strandat 910.109 kb on + strandat 910.110 kb on - strandat 910.155 kb on + strandat 910.156 kb on - strandat 910.156 kb on - strandat 910.293 kb on + strandat 910.294 kb on - strandat 910.356 kb on + strandat 910.356 kb on + strandat 910.624 kb on + strandat 910.624 kb on + strandat 910.625 kb on - strandat 910.634 kb on + strandat 910.725 kb on - strandat 911.145 kb on + strandat 911.146 kb on - strandat 911.153 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich
remove
907,590 + Rru_A0769 0.35 -0.0
907,591 - Rru_A0769 0.35 -0.1
907,593 + Rru_A0769 0.35 -0.2
907,593 + Rru_A0769 0.35 +0.1
907,593 + Rru_A0769 0.35 -0.1
907,594 - Rru_A0769 0.36 -0.9
907,761 + Rru_A0769 0.52 -0.1
907,762 - Rru_A0769 0.52 -0.0
907,762 - Rru_A0769 0.52 +0.3
907,825 - Rru_A0769 0.58 -0.1
907,825 - Rru_A0769 0.58 -0.2
907,825 - Rru_A0769 0.58 -0.6
907,933 + Rru_A0769 0.68 -0.6
907,933 + Rru_A0769 0.68 -0.0
907,934 - Rru_A0769 0.68 +0.1
907,934 - Rru_A0769 0.68 -0.5
907,934 - Rru_A0769 0.68 -0.8
908,163 + -0.2
908,163 + +1.5
908,163 + -0.5
908,163 + -0.5
908,163 + -0.7
908,163 + -0.2
908,163 + -0.7
908,163 + -0.4
908,163 + -1.3
908,164 - -0.3
908,164 - -0.5
908,164 - -1.0
908,164 - +0.2
908,164 - +0.2
908,164 - -0.3
908,271 + -0.3
908,271 + -0.5
908,271 + +0.3
908,324 - +0.1
908,324 - -0.2
908,585 + -2.2
908,585 + -0.7
908,585 + +0.2
908,585 + +1.5
908,586 - -1.0
908,856 + Rru_A0770 0.17 -0.5
908,856 + Rru_A0770 0.17 -0.7
908,864 + Rru_A0770 0.17 -0.2
908,865 - Rru_A0770 0.18 -1.0
908,865 - Rru_A0770 0.18 -1.2
908,876 + Rru_A0770 0.18 -0.8
908,877 - Rru_A0770 0.18 -1.2
908,903 + Rru_A0770 0.20 -0.9
909,000 + Rru_A0770 0.26 -1.1
909,000 + Rru_A0770 0.26 -1.1
909,001 - Rru_A0770 0.26 -0.4
909,120 - Rru_A0770 0.33 -0.3
909,120 - Rru_A0770 0.33 -0.2
909,141 + Rru_A0770 0.35 -0.7
909,142 - Rru_A0770 0.35 -0.1
909,237 - Rru_A0770 0.41 +1.5
909,237 - Rru_A0770 0.41 -0.9
909,239 + Rru_A0770 0.41 -0.9
909,240 - Rru_A0770 0.41 -1.8
909,303 - Rru_A0770 0.45 -0.1
909,308 + Rru_A0770 0.45 -1.3
909,308 + Rru_A0770 0.45 -0.7
909,308 + Rru_A0770 0.45 -0.9
909,308 + Rru_A0770 0.45 -0.8
910,045 - -0.3
910,109 + -0.5
910,110 - -0.3
910,155 + -1.0
910,156 - -1.3
910,156 - -0.7
910,293 + -0.8
910,294 - +0.2
910,356 + -0.8
910,356 + +1.5
910,624 + -0.4
910,624 + -0.6
910,625 - -0.6
910,634 + -0.5
910,725 - +0.4
911,145 + +0.6
911,146 - -0.2
911,153 - -0.8

Or see this region's nucleotide sequence