Experiment: SMN_rich
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0745 and Rru_A0746 are separated by 217 nucleotides Rru_A0746 and Rru_A0747 are separated by 134 nucleotides
Rru_A0745: Rru_A0745 - PTSINtr with GAF domain, PtsP (NCBI), at 870,988 to 873,255
_A0745
Rru_A0746: Rru_A0746 - hypothetical protein (NCBI), at 873,473 to 875,005
_A0746
Rru_A0747: Rru_A0747 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (NCBI), at 875,140 to 876,294
_A0747
Position (kb) 873
874
875
876 Strain fitness (log2 ratio) -2
-1
0
1 at 872.551 kb on + strand, within Rru_A0745 at 872.944 kb on + strand, within Rru_A0745 at 872.944 kb on + strand, within Rru_A0745 at 872.944 kb on + strand, within Rru_A0745 at 872.945 kb on - strand, within Rru_A0745 at 873.147 kb on + strand at 873.166 kb on + strand at 873.167 kb on - strand at 873.240 kb on + strand at 873.240 kb on + strand at 873.240 kb on + strand at 873.240 kb on + strand at 873.253 kb on + strand at 873.374 kb on + strand at 873.375 kb on - strand at 873.423 kb on + strand at 873.424 kb on - strand at 873.424 kb on - strand at 873.428 kb on + strand at 873.428 kb on + strand at 873.429 kb on - strand at 873.429 kb on - strand at 874.847 kb on + strand, within Rru_A0746 at 874.847 kb on + strand, within Rru_A0746 at 874.847 kb on + strand, within Rru_A0746 at 874.848 kb on - strand, within Rru_A0746 at 874.848 kb on - strand, within Rru_A0746 at 874.848 kb on - strand, within Rru_A0746 at 874.910 kb on + strand at 874.911 kb on - strand at 875.012 kb on + strand at 875.016 kb on + strand at 875.016 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich remove 872,551 + Rru_A0745 0.69 -0.5 872,944 + Rru_A0745 0.86 +0.6 872,944 + Rru_A0745 0.86 +0.5 872,944 + Rru_A0745 0.86 -0.2 872,945 - Rru_A0745 0.86 +0.3 873,147 + +0.7 873,166 + +0.7 873,167 - +0.6 873,240 + +0.4 873,240 + -0.2 873,240 + +1.5 873,240 + +0.4 873,253 + +1.5 873,374 + -0.9 873,375 - -0.8 873,423 + -1.0 873,424 - +0.4 873,424 - -0.7 873,428 + -0.5 873,428 + +0.5 873,429 - -1.3 873,429 - -1.6 874,847 + Rru_A0746 0.90 -0.9 874,847 + Rru_A0746 0.90 -0.9 874,847 + Rru_A0746 0.90 -1.3 874,848 - Rru_A0746 0.90 -0.1 874,848 - Rru_A0746 0.90 +1.4 874,848 - Rru_A0746 0.90 -2.2 874,910 + -0.2 874,911 - -0.1 875,012 + +0.3 875,016 + -0.3 875,016 + +0.7
Or see this region's nucleotide sequence