Experiment: SMN_rich
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0684 and Rru_A0685 are separated by 140 nucleotides Rru_A0685 and Rru_A0686 are separated by 83 nucleotides Rru_A0686 and Rru_A0687 are separated by 85 nucleotides
Rru_A0684: Rru_A0684 - hypothetical protein (NCBI), at 807,839 to 809,071
_A0684
Rru_A0685: Rru_A0685 - Protein of unknown function DUF81 (NCBI), at 809,212 to 809,982
_A0685
Rru_A0686: Rru_A0686 - Transcriptional Regulator, LysR family (NCBI), at 810,066 to 810,950
_A0686
Rru_A0687: Rru_A0687 - NAD(+) synthase (glutamine-hydrolyzing) (NCBI), at 811,036 to 812,712
_A0687
Position (kb) 810
811 Strain fitness (log2 ratio) -1
0
1 at 809.214 kb on - strand at 809.311 kb on - strand, within Rru_A0685 at 809.504 kb on + strand, within Rru_A0685 at 809.505 kb on - strand, within Rru_A0685 at 809.636 kb on + strand, within Rru_A0685 at 809.636 kb on + strand, within Rru_A0685 at 809.636 kb on + strand, within Rru_A0685 at 809.637 kb on - strand, within Rru_A0685 at 809.637 kb on - strand, within Rru_A0685 at 809.637 kb on - strand, within Rru_A0685 at 809.645 kb on + strand, within Rru_A0685 at 809.646 kb on - strand, within Rru_A0685 at 809.694 kb on + strand, within Rru_A0685 at 809.694 kb on + strand, within Rru_A0685 at 809.815 kb on - strand, within Rru_A0685 at 809.815 kb on - strand, within Rru_A0685 at 810.679 kb on - strand, within Rru_A0686 at 810.679 kb on - strand, within Rru_A0686
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich remove 809,214 - -0.6 809,311 - Rru_A0685 0.13 -0.5 809,504 + Rru_A0685 0.38 +0.3 809,505 - Rru_A0685 0.38 -0.5 809,636 + Rru_A0685 0.55 +0.3 809,636 + Rru_A0685 0.55 -0.3 809,636 + Rru_A0685 0.55 -0.1 809,637 - Rru_A0685 0.55 -0.5 809,637 - Rru_A0685 0.55 +0.1 809,637 - Rru_A0685 0.55 -0.2 809,645 + Rru_A0685 0.56 -0.2 809,646 - Rru_A0685 0.56 -0.4 809,694 + Rru_A0685 0.63 -0.1 809,694 + Rru_A0685 0.63 -0.5 809,815 - Rru_A0685 0.78 +1.5 809,815 - Rru_A0685 0.78 +0.1 810,679 - Rru_A0686 0.69 -0.7 810,679 - Rru_A0686 0.69 -0.8
Or see this region's nucleotide sequence