Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0671

Experiment: SMN_rich

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0669 and Rru_A0670 are separated by 170 nucleotidesRru_A0670 and Rru_A0671 are separated by 3 nucleotidesRru_A0671 and Rru_A0672 are separated by 84 nucleotidesRru_A0672 and Rru_AR0017 are separated by 217 nucleotidesRru_AR0017 and Rru_A0673 are separated by 44 nucleotides Rru_A0669: Rru_A0669 - Phosphoglycerate/bisphosphoglycerate mutase (NCBI), at 792,355 to 792,993 _A0669 Rru_A0670: Rru_A0670 - Cobalbumin biosynthesis enzyme (NCBI), at 793,164 to 793,736 _A0670 Rru_A0671: Rru_A0671 - cobalamin synthesis CobW protein (NCBI), at 793,740 to 794,792 _A0671 Rru_A0672: Rru_A0672 - hypothetical protein (NCBI), at 794,877 to 795,188 _A0672 Rru_AR0017: Rru_AR0017 - tRNA-Ser (NCBI), at 795,406 to 795,496 _AR0017 Rru_A0673: Rru_A0673 - hypothetical protein (NCBI), at 795,541 to 795,846 _A0673 Position (kb) 793 794 795Strain fitness (log2 ratio) -3 -2 -1 0 1at 792.986 kb on + strandat 792.986 kb on + strandat 792.986 kb on + strandat 792.986 kb on + strandat 792.986 kb on + strandat 792.987 kb on - strandat 792.987 kb on - strandat 792.987 kb on - strandat 792.991 kb on + strandat 792.991 kb on + strandat 792.991 kb on + strandat 792.991 kb on + strandat 793.296 kb on + strand, within Rru_A0670at 793.296 kb on + strand, within Rru_A0670at 793.297 kb on - strand, within Rru_A0670at 793.481 kb on + strand, within Rru_A0670at 793.685 kb on - strandat 794.048 kb on + strand, within Rru_A0671at 794.048 kb on + strand, within Rru_A0671at 794.048 kb on + strand, within Rru_A0671at 794.048 kb on + strand, within Rru_A0671at 794.049 kb on - strand, within Rru_A0671at 794.049 kb on - strand, within Rru_A0671at 794.049 kb on - strand, within Rru_A0671at 794.049 kb on - strand, within Rru_A0671at 794.049 kb on - strand, within Rru_A0671at 794.484 kb on - strand, within Rru_A0671at 794.682 kb on + strand, within Rru_A0671at 794.682 kb on + strand, within Rru_A0671at 794.685 kb on + strand, within Rru_A0671at 794.685 kb on + strand, within Rru_A0671at 794.685 kb on + strand, within Rru_A0671at 794.686 kb on - strand, within Rru_A0671at 794.686 kb on - strand, within Rru_A0671at 794.686 kb on - strand, within Rru_A0671at 794.791 kb on - strandat 794.862 kb on - strandat 795.021 kb on - strand, within Rru_A0672at 795.094 kb on + strand, within Rru_A0672at 795.095 kb on - strand, within Rru_A0672at 795.169 kb on - strandat 795.169 kb on - strandat 795.174 kb on - strandat 795.184 kb on - strandat 795.256 kb on + strandat 795.256 kb on + strandat 795.257 kb on - strandat 795.519 kb on + strandat 795.522 kb on + strandat 795.598 kb on + strand, within Rru_A0673at 795.599 kb on - strand, within Rru_A0673at 795.599 kb on - strand, within Rru_A0673at 795.599 kb on - strand, within Rru_A0673at 795.629 kb on - strand, within Rru_A0673at 795.629 kb on - strand, within Rru_A0673

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich
remove
792,986 + -1.1
792,986 + +0.1
792,986 + -0.2
792,986 + -0.5
792,986 + +0.3
792,987 - -0.3
792,987 - -0.3
792,987 - -0.0
792,991 + +0.5
792,991 + +0.4
792,991 + -0.8
792,991 + -0.5
793,296 + Rru_A0670 0.23 -1.3
793,296 + Rru_A0670 0.23 -0.7
793,297 - Rru_A0670 0.23 -0.2
793,481 + Rru_A0670 0.55 +1.5
793,685 - -1.0
794,048 + Rru_A0671 0.29 -1.3
794,048 + Rru_A0671 0.29 -1.3
794,048 + Rru_A0671 0.29 -0.2
794,048 + Rru_A0671 0.29 -1.3
794,049 - Rru_A0671 0.29 -1.7
794,049 - Rru_A0671 0.29 -0.2
794,049 - Rru_A0671 0.29 +0.3
794,049 - Rru_A0671 0.29 -1.3
794,049 - Rru_A0671 0.29 -1.0
794,484 - Rru_A0671 0.71 -0.7
794,682 + Rru_A0671 0.89 -0.7
794,682 + Rru_A0671 0.89 -1.2
794,685 + Rru_A0671 0.90 -0.5
794,685 + Rru_A0671 0.90 -0.9
794,685 + Rru_A0671 0.90 -1.0
794,686 - Rru_A0671 0.90 -2.9
794,686 - Rru_A0671 0.90 -0.2
794,686 - Rru_A0671 0.90 -0.7
794,791 - -0.4
794,862 - -0.5
795,021 - Rru_A0672 0.46 +0.3
795,094 + Rru_A0672 0.70 -0.2
795,095 - Rru_A0672 0.70 -0.3
795,169 - +0.3
795,169 - -0.2
795,174 - -0.7
795,184 - -0.2
795,256 + +1.0
795,256 + +0.1
795,257 - -0.2
795,519 + -0.1
795,522 + -0.5
795,598 + Rru_A0673 0.19 -0.3
795,599 - Rru_A0673 0.19 -0.3
795,599 - Rru_A0673 0.19 -0.0
795,599 - Rru_A0673 0.19 -0.2
795,629 - Rru_A0673 0.29 +0.3
795,629 - Rru_A0673 0.29 -0.1

Or see this region's nucleotide sequence