Experiment: SMN_rich
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0667 and Rru_A0668 are separated by 118 nucleotides Rru_A0668 and Rru_A0669 overlap by 4 nucleotides Rru_A0669 and Rru_A0670 are separated by 170 nucleotides
Rru_A0667: Rru_A0667 - Nicotinate-nucleotide-dimethylbenzimidazolephosphoribosyltransferase (NCBI), at 790,447 to 791,454
_A0667
Rru_A0668: Rru_A0668 - Cobalamin-5-phosphate synthase CobS (NCBI), at 791,573 to 792,358
_A0668
Rru_A0669: Rru_A0669 - Phosphoglycerate/bisphosphoglycerate mutase (NCBI), at 792,355 to 792,993
_A0669
Rru_A0670: Rru_A0670 - Cobalbumin biosynthesis enzyme (NCBI), at 793,164 to 793,736
_A0670
Position (kb) 791
792
793 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 790.925 kb on + strand, within Rru_A0667 at 790.926 kb on - strand, within Rru_A0667 at 791.026 kb on - strand, within Rru_A0667 at 791.029 kb on - strand, within Rru_A0667 at 791.029 kb on - strand, within Rru_A0667 at 791.476 kb on + strand at 791.476 kb on + strand at 791.477 kb on - strand at 791.506 kb on - strand at 791.565 kb on + strand at 791.565 kb on + strand at 791.565 kb on + strand at 791.566 kb on - strand at 791.566 kb on - strand at 791.671 kb on + strand, within Rru_A0668 at 792.233 kb on + strand, within Rru_A0668 at 792.233 kb on + strand, within Rru_A0668 at 792.234 kb on - strand, within Rru_A0668 at 792.234 kb on - strand, within Rru_A0668 at 792.234 kb on - strand, within Rru_A0668 at 792.986 kb on + strand at 792.986 kb on + strand at 792.986 kb on + strand at 792.986 kb on + strand at 792.986 kb on + strand at 792.987 kb on - strand at 792.987 kb on - strand at 792.987 kb on - strand at 792.991 kb on + strand at 792.991 kb on + strand at 792.991 kb on + strand at 792.991 kb on + strand at 793.296 kb on + strand, within Rru_A0670 at 793.296 kb on + strand, within Rru_A0670 at 793.297 kb on - strand, within Rru_A0670
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich remove 790,925 + Rru_A0667 0.47 -0.7 790,926 - Rru_A0667 0.48 +1.5 791,026 - Rru_A0667 0.57 -0.8 791,029 - Rru_A0667 0.58 -0.4 791,029 - Rru_A0667 0.58 -0.4 791,476 + +0.3 791,476 + -0.5 791,477 - +1.0 791,506 - +0.1 791,565 + -0.3 791,565 + -0.1 791,565 + +0.1 791,566 - -0.9 791,566 - -0.1 791,671 + Rru_A0668 0.12 -1.5 792,233 + Rru_A0668 0.84 -3.1 792,233 + Rru_A0668 0.84 -0.1 792,234 - Rru_A0668 0.84 -1.2 792,234 - Rru_A0668 0.84 -2.6 792,234 - Rru_A0668 0.84 -1.5 792,986 + -1.1 792,986 + +0.1 792,986 + -0.2 792,986 + -0.5 792,986 + +0.3 792,987 - -0.3 792,987 - -0.3 792,987 - -0.0 792,991 + +0.5 792,991 + +0.4 792,991 + -0.8 792,991 + -0.5 793,296 + Rru_A0670 0.23 -1.3 793,296 + Rru_A0670 0.23 -0.7 793,297 - Rru_A0670 0.23 -0.2
Or see this region's nucleotide sequence