Experiment: SMN_rich
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0482 and Rru_A0483 are separated by 355 nucleotides Rru_A0483 and Rru_A0484 are separated by 7 nucleotides Rru_A0484 and Rru_A0485 are separated by 419 nucleotides
Rru_A0482: Rru_A0482 - Protein of unknown function DUF1311 (NCBI), at 566,184 to 566,864
_A0482
Rru_A0483: Rru_A0483 - hypothetical protein (NCBI), at 567,220 to 567,480
_A0483
Rru_A0484: Rru_A0484 - hypothetical protein (NCBI), at 567,488 to 568,483
_A0484
Rru_A0485: Rru_A0485 - Magnesium chelatase ATPase subunit I (NCBI), at 568,903 to 570,087
_A0485
Position (kb) 567
568
569 Strain fitness (log2 ratio) -2
-1
0
1 at 566.669 kb on - strand, within Rru_A0482 at 566.669 kb on - strand, within Rru_A0482 at 566.707 kb on - strand, within Rru_A0482 at 566.810 kb on + strand at 566.810 kb on + strand at 566.811 kb on - strand at 566.811 kb on - strand at 566.840 kb on + strand at 566.840 kb on + strand at 566.841 kb on - strand at 566.841 kb on - strand at 566.864 kb on + strand at 566.864 kb on + strand at 566.864 kb on + strand at 566.864 kb on + strand at 566.864 kb on + strand at 566.865 kb on - strand at 566.865 kb on - strand at 566.865 kb on - strand at 566.897 kb on - strand at 566.993 kb on - strand at 566.994 kb on + strand at 566.994 kb on + strand at 566.995 kb on - strand at 567.093 kb on + strand at 567.093 kb on + strand at 567.094 kb on - strand at 567.122 kb on - strand at 567.215 kb on - strand at 567.215 kb on - strand at 567.403 kb on + strand, within Rru_A0483 at 567.404 kb on - strand, within Rru_A0483 at 567.404 kb on - strand, within Rru_A0483 at 567.432 kb on + strand, within Rru_A0483 at 567.438 kb on - strand, within Rru_A0483 at 567.630 kb on + strand, within Rru_A0484 at 567.631 kb on - strand, within Rru_A0484 at 567.631 kb on - strand, within Rru_A0484 at 567.957 kb on + strand, within Rru_A0484 at 568.027 kb on - strand, within Rru_A0484 at 568.154 kb on - strand, within Rru_A0484 at 568.154 kb on - strand, within Rru_A0484 at 568.156 kb on - strand, within Rru_A0484 at 568.218 kb on + strand, within Rru_A0484 at 568.309 kb on + strand, within Rru_A0484 at 568.309 kb on + strand, within Rru_A0484 at 568.310 kb on - strand, within Rru_A0484 at 568.312 kb on - strand, within Rru_A0484 at 568.414 kb on - strand at 568.414 kb on - strand at 568.728 kb on + strand at 568.729 kb on - strand at 568.729 kb on - strand at 568.761 kb on + strand at 568.804 kb on + strand at 568.804 kb on + strand at 568.804 kb on + strand at 568.805 kb on - strand at 568.805 kb on - strand at 568.805 kb on - strand at 568.805 kb on - strand at 568.805 kb on - strand at 568.805 kb on - strand at 568.910 kb on + strand at 568.943 kb on + strand at 568.943 kb on + strand at 568.943 kb on + strand at 568.943 kb on + strand at 568.944 kb on - strand at 568.944 kb on - strand at 569.028 kb on - strand, within Rru_A0485 at 569.185 kb on - strand, within Rru_A0485 at 569.434 kb on + strand, within Rru_A0485 at 569.435 kb on - strand, within Rru_A0485 at 569.476 kb on + strand, within Rru_A0485 at 569.476 kb on + strand, within Rru_A0485 at 569.476 kb on + strand, within Rru_A0485 at 569.477 kb on - strand, within Rru_A0485 at 569.477 kb on - strand, within Rru_A0485 at 569.477 kb on - strand, within Rru_A0485 at 569.479 kb on - strand, within Rru_A0485
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich remove 566,669 - Rru_A0482 0.71 -0.5 566,669 - Rru_A0482 0.71 -0.3 566,707 - Rru_A0482 0.77 -0.1 566,810 + +0.1 566,810 + +0.5 566,811 - -0.0 566,811 - -1.7 566,840 + -0.8 566,840 + +0.3 566,841 - -0.1 566,841 - +1.5 566,864 + -0.4 566,864 + -0.4 566,864 + +0.2 566,864 + -0.0 566,864 + -0.3 566,865 - +0.3 566,865 - -0.6 566,865 - -0.1 566,897 - +0.2 566,993 - -0.3 566,994 + +1.0 566,994 + +0.0 566,995 - -0.2 567,093 + -0.1 567,093 + -0.1 567,094 - -0.1 567,122 - +1.5 567,215 - +0.1 567,215 - -0.3 567,403 + Rru_A0483 0.70 -0.4 567,404 - Rru_A0483 0.70 +0.5 567,404 - Rru_A0483 0.70 +0.3 567,432 + Rru_A0483 0.81 +0.7 567,438 - Rru_A0483 0.84 +0.5 567,630 + Rru_A0484 0.14 -0.5 567,631 - Rru_A0484 0.14 -0.8 567,631 - Rru_A0484 0.14 -2.2 567,957 + Rru_A0484 0.47 +1.1 568,027 - Rru_A0484 0.54 -1.1 568,154 - Rru_A0484 0.67 +1.5 568,154 - Rru_A0484 0.67 +1.5 568,156 - Rru_A0484 0.67 -1.8 568,218 + Rru_A0484 0.73 +0.5 568,309 + Rru_A0484 0.82 +1.1 568,309 + Rru_A0484 0.82 -1.1 568,310 - Rru_A0484 0.83 +1.5 568,312 - Rru_A0484 0.83 -0.1 568,414 - -0.8 568,414 - -0.1 568,728 + +0.1 568,729 - +0.2 568,729 - -0.7 568,761 + +0.1 568,804 + +1.1 568,804 + -0.2 568,804 + +1.0 568,805 - -0.1 568,805 - -0.3 568,805 - +0.9 568,805 - -0.6 568,805 - +1.5 568,805 - -0.3 568,910 + +1.0 568,943 + +0.1 568,943 + -0.3 568,943 + +0.5 568,943 + +0.0 568,944 - +1.5 568,944 - -0.5 569,028 - Rru_A0485 0.11 +0.0 569,185 - Rru_A0485 0.24 -0.1 569,434 + Rru_A0485 0.45 +0.0 569,435 - Rru_A0485 0.45 -0.3 569,476 + Rru_A0485 0.48 -0.0 569,476 + Rru_A0485 0.48 -0.9 569,476 + Rru_A0485 0.48 +1.5 569,477 - Rru_A0485 0.48 +1.5 569,477 - Rru_A0485 0.48 +1.5 569,477 - Rru_A0485 0.48 +0.4 569,479 - Rru_A0485 0.49 -0.1
Or see this region's nucleotide sequence