Experiment: SMN_rich
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0404 and Rru_A0405 are separated by 45 nucleotides Rru_A0405 and Rru_A0406 overlap by 1 nucleotides Rru_A0406 and Rru_A0407 are separated by 49 nucleotides Rru_A0407 and Rru_A0408 overlap by 4 nucleotides
Rru_A0404: Rru_A0404 - Amidophosphoribosyl transferase (NCBI), at 480,759 to 482,225
_A0404
Rru_A0405: Rru_A0405 - Colicin V production protein (NCBI), at 482,271 to 482,981
_A0405
Rru_A0406: Rru_A0406 - DNA repair protein RadA (NCBI), at 482,981 to 484,390
_A0406
Rru_A0407: Rru_A0407 - ABC transporter component (NCBI), at 484,440 to 485,213
_A0407
Rru_A0408: Rru_A0408 - Protein of unknown function DUF140 (NCBI), at 485,210 to 485,983
_A0408
Position (kb) 482
483
484
485 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 482.118 kb on - strand at 482.238 kb on + strand at 482.238 kb on + strand at 482.238 kb on + strand at 482.238 kb on + strand at 482.238 kb on + strand at 482.238 kb on + strand at 482.239 kb on - strand at 482.273 kb on - strand at 483.330 kb on + strand, within Rru_A0406 at 483.330 kb on + strand, within Rru_A0406 at 483.682 kb on - strand, within Rru_A0406 at 483.700 kb on + strand, within Rru_A0406 at 483.700 kb on + strand, within Rru_A0406 at 483.700 kb on + strand, within Rru_A0406 at 483.701 kb on - strand, within Rru_A0406 at 483.701 kb on - strand, within Rru_A0406 at 483.701 kb on - strand, within Rru_A0406 at 483.858 kb on + strand, within Rru_A0406 at 483.858 kb on + strand, within Rru_A0406 at 483.859 kb on - strand, within Rru_A0406 at 484.027 kb on + strand, within Rru_A0406 at 484.027 kb on + strand, within Rru_A0406 at 484.027 kb on + strand, within Rru_A0406 at 484.027 kb on + strand, within Rru_A0406 at 484.027 kb on + strand, within Rru_A0406 at 484.028 kb on - strand, within Rru_A0406 at 484.028 kb on - strand, within Rru_A0406 at 484.029 kb on + strand, within Rru_A0406 at 484.029 kb on + strand, within Rru_A0406 at 484.029 kb on + strand, within Rru_A0406 at 484.030 kb on - strand, within Rru_A0406 at 484.341 kb on + strand at 484.341 kb on + strand at 484.485 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich remove 482,118 - -0.7 482,238 + -0.8 482,238 + +0.0 482,238 + +2.0 482,238 + +0.1 482,238 + +0.5 482,238 + -0.2 482,239 - -1.4 482,273 - -0.5 483,330 + Rru_A0406 0.25 +1.5 483,330 + Rru_A0406 0.25 -0.1 483,682 - Rru_A0406 0.50 +0.1 483,700 + Rru_A0406 0.51 +1.5 483,700 + Rru_A0406 0.51 +0.1 483,700 + Rru_A0406 0.51 -2.9 483,701 - Rru_A0406 0.51 -0.7 483,701 - Rru_A0406 0.51 -2.3 483,701 - Rru_A0406 0.51 -2.0 483,858 + Rru_A0406 0.62 +1.5 483,858 + Rru_A0406 0.62 -1.4 483,859 - Rru_A0406 0.62 +0.5 484,027 + Rru_A0406 0.74 -0.5 484,027 + Rru_A0406 0.74 +0.2 484,027 + Rru_A0406 0.74 -1.4 484,027 + Rru_A0406 0.74 -0.5 484,027 + Rru_A0406 0.74 +1.5 484,028 - Rru_A0406 0.74 -2.4 484,028 - Rru_A0406 0.74 -1.5 484,029 + Rru_A0406 0.74 -1.1 484,029 + Rru_A0406 0.74 -1.6 484,029 + Rru_A0406 0.74 -0.9 484,030 - Rru_A0406 0.74 +1.5 484,341 + +1.2 484,341 + -2.0 484,485 + -1.2
Or see this region's nucleotide sequence