Experiment: SMN_rich
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0340 and Rru_A0341 are separated by 259 nucleotides Rru_A0341 and Rru_A0342 overlap by 4 nucleotides Rru_A0342 and Rru_A0343 overlap by 11 nucleotides Rru_A0343 and Rru_A0344 are separated by 12 nucleotides
Rru_A0340: Rru_A0340 - CRISPR-associated helicase Cas3, core (NCBI), at 411,275 to 413,932
_A0340
Rru_A0341: Rru_A0341 - hypothetical protein (NCBI), at 414,192 to 415,475
_A0341
Rru_A0342: Rru_A0342 - hypothetical protein (NCBI), at 415,472 to 415,879
_A0342
Rru_A0343: Rru_A0343 - hypothetical protein (NCBI), at 415,869 to 416,432
_A0343
Rru_A0344: Rru_A0344 - CRISPR-associated protein, CT1975 (NCBI), at 416,445 to 417,590
_A0344
Position (kb) 414
415
416 Strain fitness (log2 ratio) -2
-1
0
1 at 413.346 kb on + strand, within Rru_A0340 at 413.346 kb on + strand, within Rru_A0340 at 413.346 kb on + strand, within Rru_A0340 at 413.347 kb on - strand, within Rru_A0340 at 413.414 kb on + strand, within Rru_A0340 at 413.570 kb on + strand, within Rru_A0340 at 413.570 kb on + strand, within Rru_A0340 at 413.571 kb on - strand, within Rru_A0340 at 413.583 kb on + strand, within Rru_A0340 at 413.583 kb on + strand, within Rru_A0340 at 413.583 kb on + strand, within Rru_A0340 at 413.583 kb on + strand, within Rru_A0340 at 413.584 kb on - strand, within Rru_A0340 at 413.584 kb on - strand, within Rru_A0340 at 413.584 kb on - strand, within Rru_A0340 at 413.584 kb on - strand, within Rru_A0340 at 413.584 kb on - strand, within Rru_A0340 at 413.584 kb on - strand, within Rru_A0340 at 413.584 kb on - strand, within Rru_A0340 at 413.584 kb on - strand, within Rru_A0340 at 413.663 kb on + strand, within Rru_A0340 at 413.992 kb on + strand at 414.116 kb on + strand at 414.188 kb on + strand at 414.332 kb on + strand, within Rru_A0341 at 414.332 kb on + strand, within Rru_A0341 at 414.332 kb on + strand, within Rru_A0341 at 414.332 kb on + strand, within Rru_A0341 at 415.896 kb on + strand at 416.413 kb on + strand at 416.414 kb on - strand at 416.430 kb on + strand at 416.430 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich remove 413,346 + Rru_A0340 0.78 -0.4 413,346 + Rru_A0340 0.78 -0.1 413,346 + Rru_A0340 0.78 -0.6 413,347 - Rru_A0340 0.78 +0.0 413,414 + Rru_A0340 0.80 -1.3 413,570 + Rru_A0340 0.86 +0.1 413,570 + Rru_A0340 0.86 -0.7 413,571 - Rru_A0340 0.86 -0.3 413,583 + Rru_A0340 0.87 -0.3 413,583 + Rru_A0340 0.87 -0.5 413,583 + Rru_A0340 0.87 -0.4 413,583 + Rru_A0340 0.87 -0.3 413,584 - Rru_A0340 0.87 -0.6 413,584 - Rru_A0340 0.87 -0.1 413,584 - Rru_A0340 0.87 +0.0 413,584 - Rru_A0340 0.87 +0.2 413,584 - Rru_A0340 0.87 -0.5 413,584 - Rru_A0340 0.87 -0.1 413,584 - Rru_A0340 0.87 -0.2 413,584 - Rru_A0340 0.87 -0.4 413,663 + Rru_A0340 0.90 -0.0 413,992 + +0.2 414,116 + -2.4 414,188 + -0.3 414,332 + Rru_A0341 0.11 -0.5 414,332 + Rru_A0341 0.11 +1.5 414,332 + Rru_A0341 0.11 -0.5 414,332 + Rru_A0341 0.11 -0.3 415,896 + -0.8 416,413 + +1.5 416,414 - +0.5 416,430 + -0.1 416,430 + -1.0
Or see this region's nucleotide sequence