Experiment: SMN_rich
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0302 and Rru_A0303 are separated by 438 nucleotides Rru_A0303 and Rru_A0304 are separated by 334 nucleotides Rru_A0304 and Rru_A0305 are separated by 50 nucleotides
Rru_A0302: Rru_A0302 - Hydrogenase accessory protein HypB (NCBI), at 368,703 to 369,593
_A0302
Rru_A0303: Rru_A0303 - hypothetical protein (NCBI), at 370,032 to 371,339
_A0303
Rru_A0304: Rru_A0304 - Transcriptional Regulator, XRE family (NCBI), at 371,674 to 371,964
_A0304
Rru_A0305: Rru_A0305 - Hydrogenase expression/formation protein HypE (NCBI), at 372,015 to 373,040
_A0305
Position (kb) 370
371
372 Strain fitness (log2 ratio) -2
-1
0
1
2 at 369.212 kb on + strand, within Rru_A0302 at 369.212 kb on + strand, within Rru_A0302 at 369.212 kb on + strand, within Rru_A0302 at 369.212 kb on + strand, within Rru_A0302 at 369.212 kb on + strand, within Rru_A0302 at 369.213 kb on - strand, within Rru_A0302 at 369.213 kb on - strand, within Rru_A0302 at 369.213 kb on - strand, within Rru_A0302 at 369.605 kb on + strand at 369.605 kb on + strand at 369.605 kb on + strand at 369.605 kb on + strand at 369.606 kb on - strand at 369.668 kb on + strand at 369.669 kb on - strand at 369.670 kb on + strand at 369.670 kb on + strand at 369.671 kb on - strand at 369.671 kb on - strand at 369.844 kb on + strand at 369.844 kb on + strand at 369.845 kb on - strand at 369.845 kb on - strand at 369.845 kb on - strand at 369.845 kb on - strand at 369.846 kb on + strand at 369.891 kb on + strand at 369.891 kb on + strand at 369.891 kb on + strand at 369.892 kb on - strand at 369.892 kb on - strand at 369.892 kb on - strand at 369.914 kb on - strand at 369.945 kb on - strand at 370.028 kb on + strand at 370.029 kb on - strand at 370.078 kb on + strand at 370.083 kb on - strand at 370.173 kb on - strand, within Rru_A0303 at 370.305 kb on + strand, within Rru_A0303 at 370.391 kb on + strand, within Rru_A0303 at 370.485 kb on + strand, within Rru_A0303 at 370.522 kb on + strand, within Rru_A0303 at 370.529 kb on - strand, within Rru_A0303 at 370.641 kb on - strand, within Rru_A0303 at 370.646 kb on - strand, within Rru_A0303 at 370.646 kb on - strand, within Rru_A0303 at 370.799 kb on - strand, within Rru_A0303 at 370.879 kb on - strand, within Rru_A0303 at 371.375 kb on + strand at 371.439 kb on + strand at 371.491 kb on - strand at 371.491 kb on - strand at 371.492 kb on + strand at 371.493 kb on - strand at 371.493 kb on - strand at 371.493 kb on - strand at 371.493 kb on - strand at 371.561 kb on - strand at 371.731 kb on + strand, within Rru_A0304
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich remove 369,212 + Rru_A0302 0.57 +0.4 369,212 + Rru_A0302 0.57 +1.5 369,212 + Rru_A0302 0.57 +0.6 369,212 + Rru_A0302 0.57 -0.1 369,212 + Rru_A0302 0.57 +0.2 369,213 - Rru_A0302 0.57 -0.1 369,213 - Rru_A0302 0.57 +1.0 369,213 - Rru_A0302 0.57 -0.5 369,605 + -1.6 369,605 + -0.5 369,605 + -0.6 369,605 + -0.9 369,606 - -0.2 369,668 + +0.0 369,669 - -0.2 369,670 + -0.5 369,670 + +0.1 369,671 - +0.1 369,671 - -0.2 369,844 + -1.0 369,844 + -0.4 369,845 - -1.3 369,845 - -0.1 369,845 - -0.1 369,845 - -0.1 369,846 + +0.4 369,891 + +0.3 369,891 + -0.1 369,891 + -0.0 369,892 - +0.3 369,892 - +1.2 369,892 - +0.1 369,914 - +1.9 369,945 - -0.5 370,028 + +1.1 370,029 - +0.0 370,078 + +0.0 370,083 - -0.4 370,173 - Rru_A0303 0.11 -0.4 370,305 + Rru_A0303 0.21 -1.1 370,391 + Rru_A0303 0.27 -0.7 370,485 + Rru_A0303 0.35 -0.3 370,522 + Rru_A0303 0.37 -0.4 370,529 - Rru_A0303 0.38 -0.3 370,641 - Rru_A0303 0.47 -0.5 370,646 - Rru_A0303 0.47 -0.5 370,646 - Rru_A0303 0.47 -0.3 370,799 - Rru_A0303 0.59 +0.5 370,879 - Rru_A0303 0.65 -1.2 371,375 + -1.8 371,439 + -0.3 371,491 - +0.9 371,491 - -0.4 371,492 + +0.8 371,493 - -0.2 371,493 - +0.4 371,493 - -0.0 371,493 - +0.2 371,561 - -0.4 371,731 + Rru_A0304 0.20 +0.7
Or see this region's nucleotide sequence