Experiment: SMN_rich
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0290 and Rru_A0291 are separated by 118 nucleotides Rru_A0291 and Rru_A0292 are separated by 145 nucleotides Rru_A0292 and Rru_A0293 are separated by 201 nucleotides
Rru_A0290: Rru_A0290 - Auxin Efflux Carrier (NCBI), at 356,090 to 356,974
_A0290
Rru_A0291: Rru_A0291 - hypothetical protein (NCBI), at 357,093 to 357,428
_A0291
Rru_A0292: Rru_A0292 - Integration host factor, beta subunit (NCBI), at 357,574 to 357,876
_A0292
Rru_A0293: Rru_A0293 - Ribosomal protein S1 (NCBI), at 358,078 to 359,799
_A0293
Position (kb) 357
358 Strain fitness (log2 ratio) -1
0
1 at 356.393 kb on - strand, within Rru_A0290 at 356.632 kb on + strand, within Rru_A0290 at 356.633 kb on - strand, within Rru_A0290 at 356.633 kb on - strand, within Rru_A0290 at 356.710 kb on - strand, within Rru_A0290 at 356.765 kb on + strand, within Rru_A0290 at 356.765 kb on + strand, within Rru_A0290 at 356.765 kb on + strand, within Rru_A0290 at 356.765 kb on + strand, within Rru_A0290 at 356.766 kb on - strand, within Rru_A0290 at 356.852 kb on + strand, within Rru_A0290 at 356.852 kb on + strand, within Rru_A0290 at 356.853 kb on - strand, within Rru_A0290 at 356.853 kb on - strand, within Rru_A0290 at 356.871 kb on - strand, within Rru_A0290 at 356.968 kb on + strand at 356.968 kb on + strand at 356.969 kb on - strand at 357.149 kb on - strand, within Rru_A0291 at 357.223 kb on + strand, within Rru_A0291 at 357.223 kb on + strand, within Rru_A0291 at 357.967 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich remove 356,393 - Rru_A0290 0.34 -0.2 356,632 + Rru_A0290 0.61 +0.1 356,633 - Rru_A0290 0.61 +0.2 356,633 - Rru_A0290 0.61 -0.8 356,710 - Rru_A0290 0.70 -0.2 356,765 + Rru_A0290 0.76 +0.4 356,765 + Rru_A0290 0.76 -0.5 356,765 + Rru_A0290 0.76 +1.5 356,765 + Rru_A0290 0.76 +0.1 356,766 - Rru_A0290 0.76 -0.7 356,852 + Rru_A0290 0.86 -0.8 356,852 + Rru_A0290 0.86 -0.8 356,853 - Rru_A0290 0.86 +0.2 356,853 - Rru_A0290 0.86 +0.4 356,871 - Rru_A0290 0.88 -0.3 356,968 + -0.8 356,968 + +0.5 356,969 - +0.9 357,149 - Rru_A0291 0.17 -0.9 357,223 + Rru_A0291 0.39 +1.5 357,223 + Rru_A0291 0.39 -0.3 357,967 + -0.5
Or see this region's nucleotide sequence