Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0206

Experiment: SMN_rich

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0204 and Rru_A0205 are separated by 188 nucleotidesRru_A0205 and Rru_A0206 are separated by 72 nucleotidesRru_A0206 and Rru_A0207 are separated by 43 nucleotides Rru_A0204: Rru_A0204 - BolA-like protein (NCBI), at 253,857 to 254,201 _A0204 Rru_A0205: Rru_A0205 - Heat shock protein DnaJ-like (NCBI), at 254,390 to 255,001 _A0205 Rru_A0206: Rru_A0206 - Cobalt chelatase, pCobS small subunit (NCBI), at 255,074 to 256,063 _A0206 Rru_A0207: Rru_A0207 - Cobalt chelatase, CobT subunit (NCBI), at 256,107 to 258,008 _A0207 Position (kb) 255 256 257Strain fitness (log2 ratio) -2 -1 0 1at 254.363 kb on + strandat 254.364 kb on - strandat 254.364 kb on - strandat 254.366 kb on + strandat 254.366 kb on + strandat 254.366 kb on + strandat 254.367 kb on - strandat 254.367 kb on - strandat 254.367 kb on - strandat 254.367 kb on - strandat 254.546 kb on + strand, within Rru_A0205at 254.547 kb on - strand, within Rru_A0205at 254.547 kb on - strand, within Rru_A0205at 254.547 kb on - strand, within Rru_A0205at 254.549 kb on + strand, within Rru_A0205at 254.549 kb on + strand, within Rru_A0205at 254.549 kb on + strand, within Rru_A0205at 254.550 kb on - strand, within Rru_A0205at 254.550 kb on - strand, within Rru_A0205at 254.579 kb on + strand, within Rru_A0205at 254.579 kb on + strand, within Rru_A0205at 254.580 kb on - strand, within Rru_A0205at 254.580 kb on - strand, within Rru_A0205at 254.580 kb on - strand, within Rru_A0205at 254.580 kb on - strand, within Rru_A0205at 254.580 kb on - strand, within Rru_A0205at 254.582 kb on - strand, within Rru_A0205at 254.582 kb on - strand, within Rru_A0205at 254.597 kb on + strand, within Rru_A0205at 254.598 kb on - strand, within Rru_A0205at 254.598 kb on - strand, within Rru_A0205at 254.601 kb on - strand, within Rru_A0205at 254.882 kb on + strand, within Rru_A0205at 254.883 kb on - strand, within Rru_A0205at 254.883 kb on - strand, within Rru_A0205at 254.904 kb on - strand, within Rru_A0205at 254.904 kb on - strand, within Rru_A0205at 254.955 kb on + strandat 254.956 kb on - strandat 254.970 kb on - strandat 255.092 kb on + strandat 255.103 kb on + strandat 255.104 kb on - strandat 255.104 kb on - strandat 255.212 kb on + strand, within Rru_A0206at 255.213 kb on - strand, within Rru_A0206at 255.287 kb on + strand, within Rru_A0206at 255.500 kb on + strand, within Rru_A0206at 255.605 kb on + strand, within Rru_A0206at 255.605 kb on + strand, within Rru_A0206at 255.729 kb on - strand, within Rru_A0206at 255.729 kb on - strand, within Rru_A0206at 255.999 kb on - strandat 256.115 kb on + strandat 256.115 kb on + strandat 256.116 kb on - strandat 256.116 kb on - strandat 256.116 kb on - strandat 256.227 kb on + strandat 256.228 kb on - strandat 256.228 kb on - strandat 256.230 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich
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254,363 + +1.5
254,364 - -1.9
254,364 - +1.5
254,366 + +0.1
254,366 + -0.5
254,366 + +0.3
254,367 - -0.4
254,367 - +0.3
254,367 - +1.5
254,367 - -0.3
254,546 + Rru_A0205 0.25 -1.1
254,547 - Rru_A0205 0.26 +1.5
254,547 - Rru_A0205 0.26 -0.2
254,547 - Rru_A0205 0.26 -0.4
254,549 + Rru_A0205 0.26 -0.2
254,549 + Rru_A0205 0.26 -1.1
254,549 + Rru_A0205 0.26 -0.4
254,550 - Rru_A0205 0.26 -0.2
254,550 - Rru_A0205 0.26 +0.1
254,579 + Rru_A0205 0.31 +1.0
254,579 + Rru_A0205 0.31 -0.2
254,580 - Rru_A0205 0.31 -0.1
254,580 - Rru_A0205 0.31 -0.1
254,580 - Rru_A0205 0.31 -0.0
254,580 - Rru_A0205 0.31 -1.1
254,580 - Rru_A0205 0.31 -0.0
254,582 - Rru_A0205 0.31 -0.4
254,582 - Rru_A0205 0.31 -0.9
254,597 + Rru_A0205 0.34 +1.1
254,598 - Rru_A0205 0.34 -0.5
254,598 - Rru_A0205 0.34 -1.3
254,601 - Rru_A0205 0.34 -0.0
254,882 + Rru_A0205 0.80 -0.5
254,883 - Rru_A0205 0.81 -0.4
254,883 - Rru_A0205 0.81 -0.2
254,904 - Rru_A0205 0.84 -0.4
254,904 - Rru_A0205 0.84 +0.1
254,955 + +0.6
254,956 - +0.4
254,970 - -0.6
255,092 + -1.5
255,103 + -0.5
255,104 - -1.5
255,104 - -0.5
255,212 + Rru_A0206 0.14 +0.3
255,213 - Rru_A0206 0.14 -0.7
255,287 + Rru_A0206 0.22 -0.6
255,500 + Rru_A0206 0.43 -0.1
255,605 + Rru_A0206 0.54 +0.5
255,605 + Rru_A0206 0.54 -1.1
255,729 - Rru_A0206 0.66 +0.1
255,729 - Rru_A0206 0.66 -1.9
255,999 - -0.3
256,115 + -0.9
256,115 + -0.5
256,116 - -1.9
256,116 - -0.6
256,116 - -2.5
256,227 + -0.9
256,228 - +0.7
256,228 - +0.1
256,230 - -0.3

Or see this region's nucleotide sequence