Experiment: SMN_rich
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0158 and Rru_A0159 are separated by 138 nucleotides Rru_A0159 and Rru_A0160 are separated by 123 nucleotides Rru_A0160 and Rru_A0161 are separated by 307 nucleotides
Rru_A0158: Rru_A0158 - chemotaxis sensory transducer (NCBI), at 183,311 to 184,996
_A0158
Rru_A0159: Rru_A0159 - Exodeoxyribonuclease VII (NCBI), at 185,135 to 186,748
_A0159
Rru_A0160: Rru_A0160 - hypothetical protein (NCBI), at 186,872 to 187,168
_A0160
Rru_A0161: Rru_A0161 - Chaperonin Cpn10 (NCBI), at 187,476 to 187,790
_A0161
Position (kb) 185
186
187 Strain fitness (log2 ratio) -1
0
1 at 184.377 kb on + strand, within Rru_A0158 at 184.469 kb on - strand, within Rru_A0158 at 184.469 kb on - strand, within Rru_A0158 at 184.470 kb on + strand, within Rru_A0158 at 184.470 kb on + strand, within Rru_A0158 at 184.470 kb on + strand, within Rru_A0158 at 184.470 kb on + strand, within Rru_A0158 at 184.470 kb on + strand, within Rru_A0158 at 184.470 kb on + strand, within Rru_A0158 at 184.470 kb on + strand, within Rru_A0158 at 184.470 kb on + strand, within Rru_A0158 at 184.471 kb on - strand, within Rru_A0158 at 184.471 kb on - strand, within Rru_A0158 at 184.518 kb on + strand, within Rru_A0158 at 184.566 kb on + strand, within Rru_A0158 at 184.567 kb on - strand, within Rru_A0158 at 184.714 kb on - strand, within Rru_A0158 at 184.725 kb on + strand, within Rru_A0158 at 184.725 kb on + strand, within Rru_A0158 at 184.725 kb on + strand, within Rru_A0158 at 184.726 kb on - strand, within Rru_A0158 at 184.726 kb on - strand, within Rru_A0158 at 184.740 kb on + strand, within Rru_A0158 at 184.741 kb on - strand, within Rru_A0158 at 184.945 kb on + strand at 184.946 kb on - strand at 184.978 kb on + strand at 184.978 kb on + strand at 184.978 kb on + strand at 184.984 kb on + strand at 185.002 kb on + strand at 185.002 kb on + strand at 185.002 kb on + strand at 185.002 kb on + strand at 185.003 kb on - strand at 185.003 kb on - strand at 185.003 kb on - strand at 185.070 kb on - strand at 185.071 kb on + strand at 185.077 kb on + strand at 185.079 kb on + strand at 185.079 kb on + strand at 185.079 kb on + strand at 185.080 kb on - strand at 185.080 kb on - strand at 185.080 kb on - strand at 185.080 kb on - strand at 185.404 kb on - strand, within Rru_A0159 at 186.450 kb on + strand, within Rru_A0159 at 186.451 kb on - strand, within Rru_A0159 at 186.468 kb on + strand, within Rru_A0159 at 186.468 kb on + strand, within Rru_A0159 at 186.469 kb on - strand, within Rru_A0159 at 186.469 kb on - strand, within Rru_A0159 at 186.592 kb on - strand at 186.880 kb on + strand at 186.880 kb on + strand at 187.038 kb on + strand, within Rru_A0160 at 187.038 kb on + strand, within Rru_A0160 at 187.038 kb on + strand, within Rru_A0160 at 187.039 kb on - strand, within Rru_A0160 at 187.039 kb on - strand, within Rru_A0160 at 187.074 kb on + strand, within Rru_A0160 at 187.075 kb on - strand, within Rru_A0160 at 187.257 kb on - strand at 187.289 kb on + strand at 187.289 kb on + strand at 187.289 kb on + strand at 187.289 kb on + strand at 187.299 kb on + strand at 187.300 kb on - strand at 187.379 kb on - strand at 187.379 kb on - strand at 187.452 kb on + strand at 187.453 kb on - strand at 187.453 kb on - strand at 187.720 kb on - strand, within Rru_A0161
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich remove 184,377 + Rru_A0158 0.63 -0.2 184,469 - Rru_A0158 0.69 +0.7 184,469 - Rru_A0158 0.69 +1.5 184,470 + Rru_A0158 0.69 +1.5 184,470 + Rru_A0158 0.69 -0.2 184,470 + Rru_A0158 0.69 -1.0 184,470 + Rru_A0158 0.69 -0.1 184,470 + Rru_A0158 0.69 +0.1 184,470 + Rru_A0158 0.69 -0.1 184,470 + Rru_A0158 0.69 +1.5 184,470 + Rru_A0158 0.69 -0.5 184,471 - Rru_A0158 0.69 +1.3 184,471 - Rru_A0158 0.69 -0.2 184,518 + Rru_A0158 0.72 -0.7 184,566 + Rru_A0158 0.74 -1.2 184,567 - Rru_A0158 0.74 -1.6 184,714 - Rru_A0158 0.83 +1.2 184,725 + Rru_A0158 0.84 +0.6 184,725 + Rru_A0158 0.84 +0.2 184,725 + Rru_A0158 0.84 +0.7 184,726 - Rru_A0158 0.84 +0.1 184,726 - Rru_A0158 0.84 -0.0 184,740 + Rru_A0158 0.85 -0.9 184,741 - Rru_A0158 0.85 +0.5 184,945 + -0.2 184,946 - -0.1 184,978 + -1.1 184,978 + -0.2 184,978 + +0.4 184,984 + +0.0 185,002 + +0.0 185,002 + +1.5 185,002 + -0.5 185,002 + +1.5 185,003 - +0.9 185,003 - -0.2 185,003 - +0.3 185,070 - -1.0 185,071 + -1.7 185,077 + -0.3 185,079 + -0.3 185,079 + +0.2 185,079 + +0.3 185,080 - +0.3 185,080 - -0.2 185,080 - +0.1 185,080 - -0.3 185,404 - Rru_A0159 0.17 +0.5 186,450 + Rru_A0159 0.81 -0.1 186,451 - Rru_A0159 0.82 -1.4 186,468 + Rru_A0159 0.83 -0.3 186,468 + Rru_A0159 0.83 -0.9 186,469 - Rru_A0159 0.83 -0.3 186,469 - Rru_A0159 0.83 -1.2 186,592 - +0.2 186,880 + -0.2 186,880 + -0.1 187,038 + Rru_A0160 0.56 -0.3 187,038 + Rru_A0160 0.56 -0.0 187,038 + Rru_A0160 0.56 +0.1 187,039 - Rru_A0160 0.56 -0.5 187,039 - Rru_A0160 0.56 -0.9 187,074 + Rru_A0160 0.68 -0.5 187,075 - Rru_A0160 0.68 +0.4 187,257 - -0.1 187,289 + -0.1 187,289 + -0.5 187,289 + -0.1 187,289 + -0.2 187,299 + -0.7 187,300 - +1.5 187,379 - +0.0 187,379 - +0.2 187,452 + +1.0 187,453 - -0.8 187,453 - +0.4 187,720 - Rru_A0161 0.77 -0.5
Or see this region's nucleotide sequence