Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0147

Experiment: SMN_rich

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0145 and Rru_A0146 are separated by 109 nucleotidesRru_A0146 and Rru_A0147 are separated by 96 nucleotidesRru_A0147 and Rru_A0148 are separated by 60 nucleotides Rru_A0145: Rru_A0145 - Transcriptional Regulator, TetR family (NCBI), at 168,772 to 169,380 _A0145 Rru_A0146: Rru_A0146 - Inorganic diphosphatase (NCBI), at 169,490 to 170,029 _A0146 Rru_A0147: Rru_A0147 - Major facilitator superfamily MFS_1 (NCBI), at 170,126 to 171,778 _A0147 Rru_A0148: Rru_A0148 - GTP-binding protein TypA (NCBI), at 171,839 to 173,680 _A0148 Position (kb) 170 171 172Strain fitness (log2 ratio) -2 -1 0 1at 169.169 kb on + strand, within Rru_A0145at 169.169 kb on + strand, within Rru_A0145at 169.170 kb on - strand, within Rru_A0145at 169.170 kb on - strand, within Rru_A0145at 169.218 kb on + strand, within Rru_A0145at 169.218 kb on + strand, within Rru_A0145at 169.218 kb on + strand, within Rru_A0145at 169.218 kb on + strand, within Rru_A0145at 169.219 kb on - strand, within Rru_A0145at 169.219 kb on - strand, within Rru_A0145at 169.220 kb on + strand, within Rru_A0145at 169.220 kb on + strand, within Rru_A0145at 169.220 kb on + strand, within Rru_A0145at 169.220 kb on + strand, within Rru_A0145at 169.220 kb on + strand, within Rru_A0145at 169.221 kb on - strand, within Rru_A0145at 169.221 kb on - strand, within Rru_A0145at 169.221 kb on - strand, within Rru_A0145at 170.084 kb on + strandat 170.085 kb on - strandat 170.301 kb on + strand, within Rru_A0147at 170.302 kb on - strand, within Rru_A0147at 170.302 kb on - strand, within Rru_A0147at 170.302 kb on - strand, within Rru_A0147at 170.302 kb on - strand, within Rru_A0147at 170.344 kb on - strand, within Rru_A0147at 170.344 kb on - strand, within Rru_A0147at 170.574 kb on + strand, within Rru_A0147at 170.574 kb on + strand, within Rru_A0147at 170.574 kb on + strand, within Rru_A0147at 170.574 kb on + strand, within Rru_A0147at 170.575 kb on - strand, within Rru_A0147at 170.575 kb on - strand, within Rru_A0147at 170.575 kb on - strand, within Rru_A0147at 170.575 kb on - strand, within Rru_A0147at 170.613 kb on + strand, within Rru_A0147at 170.613 kb on + strand, within Rru_A0147at 170.614 kb on - strand, within Rru_A0147at 170.614 kb on - strand, within Rru_A0147at 170.614 kb on - strand, within Rru_A0147at 170.701 kb on - strand, within Rru_A0147at 170.731 kb on + strand, within Rru_A0147at 170.732 kb on - strand, within Rru_A0147at 170.733 kb on + strand, within Rru_A0147at 170.733 kb on + strand, within Rru_A0147at 170.733 kb on + strand, within Rru_A0147at 170.733 kb on + strand, within Rru_A0147at 170.734 kb on - strand, within Rru_A0147at 170.734 kb on - strand, within Rru_A0147at 170.734 kb on - strand, within Rru_A0147at 170.734 kb on - strand, within Rru_A0147at 170.734 kb on - strand, within Rru_A0147at 170.949 kb on - strand, within Rru_A0147at 171.085 kb on - strand, within Rru_A0147at 171.193 kb on + strand, within Rru_A0147at 171.194 kb on - strand, within Rru_A0147at 171.195 kb on + strand, within Rru_A0147at 171.195 kb on + strand, within Rru_A0147at 171.195 kb on + strand, within Rru_A0147at 171.195 kb on + strand, within Rru_A0147at 171.195 kb on + strand, within Rru_A0147at 171.196 kb on - strand, within Rru_A0147at 171.196 kb on - strand, within Rru_A0147at 171.196 kb on - strand, within Rru_A0147at 171.196 kb on - strand, within Rru_A0147at 171.365 kb on + strand, within Rru_A0147at 171.365 kb on + strand, within Rru_A0147at 171.365 kb on + strand, within Rru_A0147at 171.365 kb on + strand, within Rru_A0147at 171.365 kb on + strand, within Rru_A0147at 171.365 kb on + strand, within Rru_A0147at 171.366 kb on - strand, within Rru_A0147at 171.366 kb on - strand, within Rru_A0147at 171.366 kb on - strand, within Rru_A0147at 171.366 kb on - strand, within Rru_A0147at 171.471 kb on + strand, within Rru_A0147at 171.471 kb on + strand, within Rru_A0147at 171.819 kb on + strandat 171.951 kb on + strandat 171.951 kb on + strandat 171.951 kb on + strandat 171.951 kb on + strandat 171.952 kb on - strandat 171.952 kb on - strandat 171.952 kb on - strandat 172.167 kb on + strand, within Rru_A0148at 172.498 kb on + strand, within Rru_A0148at 172.498 kb on + strand, within Rru_A0148at 172.499 kb on - strand, within Rru_A0148at 172.499 kb on - strand, within Rru_A0148at 172.500 kb on + strand, within Rru_A0148at 172.501 kb on - strand, within Rru_A0148at 172.501 kb on - strand, within Rru_A0148at 172.773 kb on + strand, within Rru_A0148at 172.773 kb on + strand, within Rru_A0148at 172.773 kb on + strand, within Rru_A0148at 172.774 kb on - strand, within Rru_A0148

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich
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169,169 + Rru_A0145 0.65 +1.5
169,169 + Rru_A0145 0.65 +0.0
169,170 - Rru_A0145 0.65 +0.1
169,170 - Rru_A0145 0.65 -1.0
169,218 + Rru_A0145 0.73 -0.3
169,218 + Rru_A0145 0.73 -0.1
169,218 + Rru_A0145 0.73 +0.3
169,218 + Rru_A0145 0.73 +1.5
169,219 - Rru_A0145 0.73 -0.1
169,219 - Rru_A0145 0.73 -1.0
169,220 + Rru_A0145 0.74 -0.1
169,220 + Rru_A0145 0.74 +0.1
169,220 + Rru_A0145 0.74 -0.4
169,220 + Rru_A0145 0.74 -0.1
169,220 + Rru_A0145 0.74 +0.3
169,221 - Rru_A0145 0.74 -0.6
169,221 - Rru_A0145 0.74 +0.0
169,221 - Rru_A0145 0.74 +0.1
170,084 + +0.3
170,085 - +0.5
170,301 + Rru_A0147 0.11 -0.7
170,302 - Rru_A0147 0.11 -0.2
170,302 - Rru_A0147 0.11 -0.1
170,302 - Rru_A0147 0.11 -1.0
170,302 - Rru_A0147 0.11 -1.0
170,344 - Rru_A0147 0.13 +1.5
170,344 - Rru_A0147 0.13 +1.5
170,574 + Rru_A0147 0.27 -0.3
170,574 + Rru_A0147 0.27 +0.8
170,574 + Rru_A0147 0.27 +1.5
170,574 + Rru_A0147 0.27 +1.5
170,575 - Rru_A0147 0.27 -0.2
170,575 - Rru_A0147 0.27 +0.7
170,575 - Rru_A0147 0.27 -0.9
170,575 - Rru_A0147 0.27 +0.1
170,613 + Rru_A0147 0.29 -1.7
170,613 + Rru_A0147 0.29 +0.1
170,614 - Rru_A0147 0.30 +0.7
170,614 - Rru_A0147 0.30 +1.5
170,614 - Rru_A0147 0.30 -0.7
170,701 - Rru_A0147 0.35 -0.9
170,731 + Rru_A0147 0.37 +1.5
170,732 - Rru_A0147 0.37 +1.5
170,733 + Rru_A0147 0.37 -0.9
170,733 + Rru_A0147 0.37 -0.1
170,733 + Rru_A0147 0.37 +1.5
170,733 + Rru_A0147 0.37 -0.5
170,734 - Rru_A0147 0.37 -0.2
170,734 - Rru_A0147 0.37 -1.2
170,734 - Rru_A0147 0.37 -0.5
170,734 - Rru_A0147 0.37 -0.3
170,734 - Rru_A0147 0.37 -0.1
170,949 - Rru_A0147 0.50 -2.7
171,085 - Rru_A0147 0.58 +0.5
171,193 + Rru_A0147 0.65 -0.2
171,194 - Rru_A0147 0.65 -0.1
171,195 + Rru_A0147 0.65 -0.1
171,195 + Rru_A0147 0.65 -0.7
171,195 + Rru_A0147 0.65 -0.0
171,195 + Rru_A0147 0.65 -0.3
171,195 + Rru_A0147 0.65 +0.0
171,196 - Rru_A0147 0.65 -0.1
171,196 - Rru_A0147 0.65 -0.5
171,196 - Rru_A0147 0.65 +0.7
171,196 - Rru_A0147 0.65 -0.3
171,365 + Rru_A0147 0.75 -0.1
171,365 + Rru_A0147 0.75 -0.9
171,365 + Rru_A0147 0.75 -1.5
171,365 + Rru_A0147 0.75 +1.5
171,365 + Rru_A0147 0.75 -0.0
171,365 + Rru_A0147 0.75 -0.7
171,366 - Rru_A0147 0.75 -1.3
171,366 - Rru_A0147 0.75 +0.6
171,366 - Rru_A0147 0.75 -1.8
171,366 - Rru_A0147 0.75 +0.7
171,471 + Rru_A0147 0.81 +0.7
171,471 + Rru_A0147 0.81 -1.3
171,819 + -0.5
171,951 + -0.6
171,951 + -0.7
171,951 + -1.4
171,951 + -0.0
171,952 - -0.9
171,952 - -0.8
171,952 - -1.2
172,167 + Rru_A0148 0.18 -0.6
172,498 + Rru_A0148 0.36 -0.5
172,498 + Rru_A0148 0.36 -0.5
172,499 - Rru_A0148 0.36 -2.0
172,499 - Rru_A0148 0.36 -0.1
172,500 + Rru_A0148 0.36 -0.2
172,501 - Rru_A0148 0.36 +0.1
172,501 - Rru_A0148 0.36 +0.1
172,773 + Rru_A0148 0.51 -1.1
172,773 + Rru_A0148 0.51 -1.4
172,773 + Rru_A0148 0.51 -2.2
172,774 - Rru_A0148 0.51 -1.4

Or see this region's nucleotide sequence