Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0139

Experiment: SMN_rich

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0138 and Rru_A0139 are separated by 278 nucleotidesRru_A0139 and Rru_A0140 are separated by 72 nucleotidesRru_A0140 and Rru_A0141 are separated by 32 nucleotides Rru_A0138: Rru_A0138 - Leucyl aminopeptidase (NCBI), at 161,613 to 163,004 _A0138 Rru_A0139: Rru_A0139 - Transcriptional Regulator, MarR family (NCBI), at 163,283 to 163,636 _A0139 Rru_A0140: Rru_A0140 - Transcriptional Regulator, AraC family (NCBI), at 163,709 to 164,479 _A0140 Rru_A0141: Rru_A0141 - Porphobilinogen synthase (NCBI), at 164,512 to 165,495 _A0141 Position (kb) 163 164Strain fitness (log2 ratio) -2 -1 0 1 2at 162.371 kb on + strand, within Rru_A0138at 162.372 kb on - strand, within Rru_A0138at 162.372 kb on - strand, within Rru_A0138at 162.542 kb on + strand, within Rru_A0138at 162.543 kb on - strand, within Rru_A0138at 162.667 kb on + strand, within Rru_A0138at 162.667 kb on + strand, within Rru_A0138at 162.668 kb on - strand, within Rru_A0138at 163.061 kb on + strandat 163.138 kb on + strandat 163.156 kb on + strandat 163.157 kb on - strandat 163.163 kb on + strandat 163.163 kb on + strandat 163.163 kb on + strandat 163.164 kb on - strandat 163.164 kb on - strandat 163.164 kb on - strandat 163.166 kb on + strandat 163.195 kb on + strandat 163.196 kb on - strandat 163.196 kb on - strandat 163.196 kb on - strandat 163.268 kb on + strandat 163.320 kb on + strand, within Rru_A0139at 163.321 kb on - strand, within Rru_A0139at 163.403 kb on + strand, within Rru_A0139at 163.404 kb on - strand, within Rru_A0139at 163.404 kb on - strand, within Rru_A0139at 163.516 kb on + strand, within Rru_A0139at 163.516 kb on + strand, within Rru_A0139at 163.516 kb on + strand, within Rru_A0139at 163.517 kb on - strand, within Rru_A0139at 163.676 kb on - strandat 163.676 kb on - strandat 163.684 kb on + strandat 163.684 kb on + strandat 163.684 kb on + strandat 163.684 kb on + strandat 163.684 kb on + strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.687 kb on - strandat 163.717 kb on + strandat 163.718 kb on - strandat 163.730 kb on + strandat 163.730 kb on + strandat 163.730 kb on + strandat 163.731 kb on - strandat 163.731 kb on - strandat 163.776 kb on - strandat 163.776 kb on - strandat 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.828 kb on - strand, within Rru_A0140at 163.828 kb on - strand, within Rru_A0140at 163.828 kb on - strand, within Rru_A0140at 163.828 kb on - strand, within Rru_A0140at 163.828 kb on - strand, within Rru_A0140at 163.829 kb on + strand, within Rru_A0140at 163.830 kb on - strand, within Rru_A0140at 163.830 kb on - strand, within Rru_A0140at 163.830 kb on - strand, within Rru_A0140at 163.830 kb on - strand, within Rru_A0140at 163.830 kb on - strand, within Rru_A0140at 163.868 kb on + strand, within Rru_A0140at 163.868 kb on + strand, within Rru_A0140at 163.868 kb on + strand, within Rru_A0140at 163.869 kb on - strand, within Rru_A0140at 163.869 kb on - strand, within Rru_A0140at 163.964 kb on + strand, within Rru_A0140at 163.964 kb on + strand, within Rru_A0140at 163.964 kb on + strand, within Rru_A0140at 163.964 kb on + strand, within Rru_A0140at 163.964 kb on + strand, within Rru_A0140at 163.965 kb on - strand, within Rru_A0140at 163.965 kb on - strand, within Rru_A0140at 163.965 kb on - strand, within Rru_A0140at 163.965 kb on - strand, within Rru_A0140at 163.965 kb on - strand, within Rru_A0140at 163.967 kb on - strand, within Rru_A0140at 164.075 kb on + strand, within Rru_A0140at 164.076 kb on - strand, within Rru_A0140at 164.115 kb on + strand, within Rru_A0140at 164.116 kb on - strand, within Rru_A0140at 164.116 kb on - strand, within Rru_A0140at 164.116 kb on - strand, within Rru_A0140at 164.118 kb on + strand, within Rru_A0140at 164.118 kb on + strand, within Rru_A0140at 164.118 kb on + strand, within Rru_A0140at 164.119 kb on - strand, within Rru_A0140at 164.119 kb on - strand, within Rru_A0140at 164.188 kb on + strand, within Rru_A0140at 164.189 kb on - strand, within Rru_A0140at 164.305 kb on - strand, within Rru_A0140at 164.305 kb on - strand, within Rru_A0140at 164.402 kb on + strand, within Rru_A0140at 164.403 kb on - strandat 164.403 kb on - strandat 164.465 kb on + strandat 164.465 kb on + strandat 164.465 kb on + strandat 164.465 kb on + strandat 164.465 kb on + strandat 164.465 kb on + strandat 164.466 kb on - strandat 164.466 kb on - strandat 164.555 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich
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162,371 + Rru_A0138 0.54 +1.5
162,372 - Rru_A0138 0.55 +0.0
162,372 - Rru_A0138 0.55 +0.2
162,542 + Rru_A0138 0.67 -0.1
162,543 - Rru_A0138 0.67 -0.4
162,667 + Rru_A0138 0.76 +0.5
162,667 + Rru_A0138 0.76 -0.6
162,668 - Rru_A0138 0.76 -0.1
163,061 + -0.8
163,138 + -0.9
163,156 + -1.3
163,157 - -0.0
163,163 + +1.1
163,163 + +0.5
163,163 + -0.1
163,164 - +0.6
163,164 - -0.1
163,164 - -1.0
163,166 + -0.4
163,195 + -1.9
163,196 - -0.3
163,196 - +1.5
163,196 - +1.5
163,268 + +1.5
163,320 + Rru_A0139 0.10 -1.5
163,321 - Rru_A0139 0.11 -0.5
163,403 + Rru_A0139 0.34 -1.7
163,404 - Rru_A0139 0.34 -0.8
163,404 - Rru_A0139 0.34 +0.9
163,516 + Rru_A0139 0.66 +1.5
163,516 + Rru_A0139 0.66 -1.3
163,516 + Rru_A0139 0.66 -0.7
163,517 - Rru_A0139 0.66 -0.1
163,676 - -0.7
163,676 - -0.2
163,684 + -0.4
163,684 + -1.3
163,684 + +0.5
163,684 + +0.4
163,684 + -0.3
163,685 - -0.3
163,685 - +0.1
163,685 - +0.2
163,685 - +0.7
163,685 - -0.6
163,685 - -0.6
163,685 - -0.4
163,685 - +0.2
163,687 - -0.8
163,717 + +0.8
163,718 - -0.5
163,730 + -1.9
163,730 + +1.1
163,730 + -0.4
163,731 - -0.4
163,731 - -0.5
163,776 - +0.1
163,776 - +0.1
163,827 + Rru_A0140 0.15 -0.2
163,827 + Rru_A0140 0.15 -0.4
163,827 + Rru_A0140 0.15 -0.4
163,827 + Rru_A0140 0.15 -0.0
163,827 + Rru_A0140 0.15 -0.7
163,827 + Rru_A0140 0.15 +0.1
163,827 + Rru_A0140 0.15 -0.1
163,827 + Rru_A0140 0.15 +2.1
163,828 - Rru_A0140 0.15 -0.2
163,828 - Rru_A0140 0.15 +0.1
163,828 - Rru_A0140 0.15 +0.7
163,828 - Rru_A0140 0.15 -0.1
163,828 - Rru_A0140 0.15 +0.0
163,829 + Rru_A0140 0.16 -0.8
163,830 - Rru_A0140 0.16 -0.0
163,830 - Rru_A0140 0.16 +1.1
163,830 - Rru_A0140 0.16 -1.1
163,830 - Rru_A0140 0.16 -0.3
163,830 - Rru_A0140 0.16 -0.0
163,868 + Rru_A0140 0.21 -0.2
163,868 + Rru_A0140 0.21 -0.1
163,868 + Rru_A0140 0.21 -0.1
163,869 - Rru_A0140 0.21 +1.5
163,869 - Rru_A0140 0.21 +0.2
163,964 + Rru_A0140 0.33 +0.5
163,964 + Rru_A0140 0.33 +0.2
163,964 + Rru_A0140 0.33 -0.6
163,964 + Rru_A0140 0.33 -0.6
163,964 + Rru_A0140 0.33 -0.5
163,965 - Rru_A0140 0.33 +1.5
163,965 - Rru_A0140 0.33 -0.2
163,965 - Rru_A0140 0.33 -0.2
163,965 - Rru_A0140 0.33 +0.3
163,965 - Rru_A0140 0.33 -1.0
163,967 - Rru_A0140 0.33 -1.2
164,075 + Rru_A0140 0.47 -0.0
164,076 - Rru_A0140 0.48 -0.1
164,115 + Rru_A0140 0.53 -0.3
164,116 - Rru_A0140 0.53 +2.3
164,116 - Rru_A0140 0.53 +1.5
164,116 - Rru_A0140 0.53 +0.6
164,118 + Rru_A0140 0.53 -0.4
164,118 + Rru_A0140 0.53 +0.6
164,118 + Rru_A0140 0.53 -0.2
164,119 - Rru_A0140 0.53 +0.5
164,119 - Rru_A0140 0.53 -0.0
164,188 + Rru_A0140 0.62 +0.0
164,189 - Rru_A0140 0.62 +0.0
164,305 - Rru_A0140 0.77 +0.3
164,305 - Rru_A0140 0.77 -0.2
164,402 + Rru_A0140 0.90 +0.4
164,403 - +0.7
164,403 - -0.4
164,465 + -0.4
164,465 + +0.0
164,465 + -0.3
164,465 + -0.5
164,465 + -0.0
164,465 + +1.1
164,466 - +1.5
164,466 - -0.0
164,555 + -0.1

Or see this region's nucleotide sequence