Strain Fitness in Rhodospirillum rubrum S1H around Rru_B0028

Experiment: SMN_rich

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_B0026 and Rru_B0027 are separated by 283 nucleotidesRru_B0027 and Rru_B0028 overlap by 11 nucleotidesRru_B0028 and Rru_B0029 are separated by 13 nucleotides Rru_B0026: Rru_B0026 - SapC (NCBI), at 24,461 to 25,255 _B0026 Rru_B0027: Rru_B0027 - ABC-2 (NCBI), at 25,539 to 26,258 _B0027 Rru_B0028: Rru_B0028 - ABC transporter related (NCBI), at 26,248 to 27,666 _B0028 Rru_B0029: Rru_B0029 - Plasmid encoded RepA protein (NCBI), at 27,680 to 28,666 _B0029 Position (kb) 26 27 28Strain fitness (log2 ratio) -2 -1 0 1at 25.298 kb on + strandat 25.298 kb on + strandat 25.369 kb on + strandat 25.369 kb on + strandat 25.397 kb on + strandat 25.413 kb on + strandat 26.176 kb on - strand, within Rru_B0027at 26.310 kb on + strandat 26.595 kb on + strand, within Rru_B0028at 26.595 kb on + strand, within Rru_B0028at 26.975 kb on - strand, within Rru_B0028at 27.461 kb on - strand, within Rru_B0028at 27.677 kb on + strandat 27.677 kb on + strandat 27.677 kb on + strandat 27.678 kb on - strandat 27.718 kb on + strandat 27.718 kb on + strandat 27.718 kb on + strandat 27.718 kb on + strandat 27.719 kb on - strandat 27.719 kb on - strandat 27.719 kb on - strandat 27.776 kb on - strandat 27.857 kb on + strand, within Rru_B0029at 27.858 kb on - strand, within Rru_B0029at 27.987 kb on + strand, within Rru_B0029at 27.987 kb on + strand, within Rru_B0029at 27.987 kb on + strand, within Rru_B0029at 27.987 kb on + strand, within Rru_B0029at 27.987 kb on + strand, within Rru_B0029at 27.987 kb on + strand, within Rru_B0029at 27.987 kb on + strand, within Rru_B0029at 27.987 kb on + strand, within Rru_B0029at 27.987 kb on + strand, within Rru_B0029at 27.987 kb on + strand, within Rru_B0029at 27.987 kb on + strand, within Rru_B0029at 27.987 kb on + strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.991 kb on + strand, within Rru_B0029at 27.991 kb on + strand, within Rru_B0029at 27.991 kb on + strand, within Rru_B0029at 27.991 kb on + strand, within Rru_B0029at 27.992 kb on - strand, within Rru_B0029at 27.992 kb on - strand, within Rru_B0029at 27.992 kb on - strand, within Rru_B0029at 27.992 kb on - strand, within Rru_B0029at 27.992 kb on - strand, within Rru_B0029at 27.992 kb on - strand, within Rru_B0029at 27.992 kb on - strand, within Rru_B0029at 28.106 kb on + strand, within Rru_B0029at 28.168 kb on + strand, within Rru_B0029at 28.260 kb on + strand, within Rru_B0029at 28.260 kb on + strand, within Rru_B0029at 28.260 kb on + strand, within Rru_B0029at 28.365 kb on + strand, within Rru_B0029at 28.366 kb on - strand, within Rru_B0029at 28.366 kb on - strand, within Rru_B0029at 28.395 kb on + strand, within Rru_B0029at 28.395 kb on + strand, within Rru_B0029at 28.531 kb on + strand, within Rru_B0029

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich
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25,298 + +1.1
25,298 + +1.1
25,369 + +1.1
25,369 + +1.1
25,397 + +0.0
25,413 + -0.1
26,176 - Rru_B0027 0.88 -0.9
26,310 + +0.1
26,595 + Rru_B0028 0.24 -1.2
26,595 + Rru_B0028 0.24 +1.1
26,975 - Rru_B0028 0.51 -0.3
27,461 - Rru_B0028 0.85 -0.5
27,677 + +1.4
27,677 + -0.3
27,677 + +0.1
27,678 - -0.5
27,718 + +0.2
27,718 + -0.6
27,718 + -1.5
27,718 + -0.5
27,719 - -1.0
27,719 - -0.6
27,719 - -0.6
27,776 - +0.3
27,857 + Rru_B0029 0.18 -0.9
27,858 - Rru_B0029 0.18 +0.2
27,987 + Rru_B0029 0.31 -0.2
27,987 + Rru_B0029 0.31 -0.9
27,987 + Rru_B0029 0.31 -0.7
27,987 + Rru_B0029 0.31 -0.1
27,987 + Rru_B0029 0.31 -0.5
27,987 + Rru_B0029 0.31 -0.3
27,987 + Rru_B0029 0.31 +1.1
27,987 + Rru_B0029 0.31 +0.6
27,987 + Rru_B0029 0.31 +1.1
27,987 + Rru_B0029 0.31 -0.1
27,987 + Rru_B0029 0.31 +0.1
27,987 + Rru_B0029 0.31 +0.2
27,988 - Rru_B0029 0.31 -0.2
27,988 - Rru_B0029 0.31 +0.7
27,988 - Rru_B0029 0.31 +1.4
27,988 - Rru_B0029 0.31 -0.7
27,988 - Rru_B0029 0.31 +0.0
27,988 - Rru_B0029 0.31 +0.5
27,988 - Rru_B0029 0.31 -0.6
27,988 - Rru_B0029 0.31 -1.3
27,988 - Rru_B0029 0.31 -1.5
27,988 - Rru_B0029 0.31 -1.7
27,988 - Rru_B0029 0.31 -0.4
27,988 - Rru_B0029 0.31 -0.2
27,988 - Rru_B0029 0.31 -0.1
27,988 - Rru_B0029 0.31 +0.7
27,988 - Rru_B0029 0.31 +0.9
27,988 - Rru_B0029 0.31 -0.5
27,988 - Rru_B0029 0.31 +0.1
27,988 - Rru_B0029 0.31 -1.0
27,988 - Rru_B0029 0.31 +0.3
27,991 + Rru_B0029 0.32 +0.1
27,991 + Rru_B0029 0.32 +0.3
27,991 + Rru_B0029 0.32 +0.2
27,991 + Rru_B0029 0.32 +0.8
27,992 - Rru_B0029 0.32 +1.1
27,992 - Rru_B0029 0.32 -0.4
27,992 - Rru_B0029 0.32 +0.3
27,992 - Rru_B0029 0.32 +0.5
27,992 - Rru_B0029 0.32 +1.1
27,992 - Rru_B0029 0.32 +0.7
27,992 - Rru_B0029 0.32 +0.5
28,106 + Rru_B0029 0.43 -0.3
28,168 + Rru_B0029 0.49 -0.1
28,260 + Rru_B0029 0.59 -0.2
28,260 + Rru_B0029 0.59 +1.1
28,260 + Rru_B0029 0.59 -0.3
28,365 + Rru_B0029 0.69 +1.2
28,366 - Rru_B0029 0.70 -0.0
28,366 - Rru_B0029 0.70 -2.6
28,395 + Rru_B0029 0.72 +0.1
28,395 + Rru_B0029 0.72 +1.3
28,531 + Rru_B0029 0.86 +0.1

Or see this region's nucleotide sequence