Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08940 and PGA1_c08950 are separated by 232 nucleotides PGA1_c08950 and PGA1_c08960 are separated by 426 nucleotides PGA1_c08960 and PGA1_c08970 are separated by 19 nucleotides PGA1_c08970 and PGA1_c08980 are separated by 205 nucleotides PGA1_c08980 and PGA1_c08990 are separated by 142 nucleotides PGA1_c08990 and PGA1_c09000 overlap by 2 nucleotides
PGA1_c08940: PGA1_c08940 - N utilization substance protein B homolog, at 923,710 to 924,201
_c08940
PGA1_c08950: PGA1_c08950 - hypothetical protein, at 924,434 to 924,763
_c08950
PGA1_c08960: PGA1_c08960 - DNA repair endonuclease mmcB (DUF1052) <small>(from data)</small>, at 925,190 to 925,645
_c08960
PGA1_c08970: PGA1_c08970 - hypothetical protein, at 925,665 to 925,853
_c08970
PGA1_c08980: PGA1_c08980 - tRNA-His, at 926,059 to 926,135
_c08980
PGA1_c08990: PGA1_c08990 - hypothetical protein, at 926,278 to 926,592
_c08990
PGA1_c09000: PGA1_c09000 - ribosomal large subunit pseudouridine synthase D, at 926,591 to 927,625
_c09000
Position (kb) 925
926 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 924.224 kb on + strand at 924.224 kb on + strand at 924.224 kb on + strand at 924.227 kb on + strand at 924.229 kb on + strand at 924.232 kb on - strand at 924.232 kb on - strand at 924.232 kb on - strand at 924.232 kb on - strand at 924.237 kb on + strand at 924.237 kb on - strand at 924.237 kb on - strand at 924.245 kb on - strand at 924.282 kb on + strand at 924.283 kb on - strand at 924.417 kb on + strand at 924.502 kb on - strand, within PGA1_c08950 at 924.552 kb on - strand, within PGA1_c08950 at 924.581 kb on + strand, within PGA1_c08950 at 924.591 kb on - strand, within PGA1_c08950 at 924.706 kb on + strand, within PGA1_c08950 at 924.947 kb on - strand at 925.023 kb on + strand at 925.137 kb on + strand at 925.202 kb on - strand at 925.206 kb on + strand at 925.214 kb on - strand at 925.248 kb on - strand, within PGA1_c08960 at 925.248 kb on - strand, within PGA1_c08960 at 925.258 kb on - strand, within PGA1_c08960 at 925.321 kb on + strand, within PGA1_c08960 at 925.333 kb on + strand, within PGA1_c08960 at 925.338 kb on + strand, within PGA1_c08960 at 925.346 kb on - strand, within PGA1_c08960 at 925.348 kb on + strand, within PGA1_c08960 at 925.348 kb on + strand, within PGA1_c08960 at 925.393 kb on + strand, within PGA1_c08960 at 925.397 kb on + strand, within PGA1_c08960 at 925.398 kb on + strand, within PGA1_c08960 at 925.401 kb on - strand, within PGA1_c08960 at 925.401 kb on - strand, within PGA1_c08960 at 925.406 kb on - strand, within PGA1_c08960 at 925.433 kb on + strand, within PGA1_c08960 at 925.472 kb on + strand, within PGA1_c08960 at 925.625 kb on + strand at 925.632 kb on - strand at 925.633 kb on - strand at 925.699 kb on + strand, within PGA1_c08970 at 925.840 kb on + strand at 925.873 kb on - strand at 925.880 kb on - strand at 925.901 kb on + strand at 925.929 kb on + strand at 925.944 kb on + strand at 925.952 kb on - strand at 925.952 kb on - strand at 925.963 kb on - strand at 925.963 kb on - strand at 926.233 kb on + strand at 926.243 kb on - strand at 926.243 kb on - strand at 926.243 kb on - strand at 926.243 kb on - strand at 926.243 kb on - strand at 926.243 kb on - strand at 926.243 kb on - strand at 926.293 kb on - strand at 926.293 kb on - strand at 926.340 kb on - strand, within PGA1_c08990 at 926.439 kb on + strand, within PGA1_c08990 at 926.484 kb on - strand, within PGA1_c08990 at 926.484 kb on - strand, within PGA1_c08990 at 926.596 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 924,224 + +0.4 924,224 + +0.1 924,224 + +0.5 924,227 + -0.6 924,229 + +0.1 924,232 - +1.5 924,232 - +0.5 924,232 - -0.7 924,232 - -0.5 924,237 + +0.4 924,237 - -0.3 924,237 - -0.9 924,245 - -1.2 924,282 + +0.3 924,283 - +0.4 924,417 + +1.7 924,502 - PGA1_c08950 0.21 -0.1 924,552 - PGA1_c08950 0.36 +0.6 924,581 + PGA1_c08950 0.45 +0.3 924,591 - PGA1_c08950 0.48 -0.9 924,706 + PGA1_c08950 0.82 -1.1 924,947 - -0.9 925,023 + +1.7 925,137 + -0.1 925,202 - +0.4 925,206 + +0.1 925,214 - +0.0 925,248 - PGA1_c08960 0.13 -1.1 925,248 - PGA1_c08960 0.13 +0.2 925,258 - PGA1_c08960 0.15 -0.2 925,321 + PGA1_c08960 0.29 -1.7 925,333 + PGA1_c08960 0.31 -0.6 925,338 + PGA1_c08960 0.32 -0.5 925,346 - PGA1_c08960 0.34 +0.3 925,348 + PGA1_c08960 0.35 -1.7 925,348 + PGA1_c08960 0.35 -1.3 925,393 + PGA1_c08960 0.45 +0.2 925,397 + PGA1_c08960 0.45 -0.9 925,398 + PGA1_c08960 0.46 -0.4 925,401 - PGA1_c08960 0.46 -0.3 925,401 - PGA1_c08960 0.46 +0.6 925,406 - PGA1_c08960 0.47 -0.7 925,433 + PGA1_c08960 0.53 +0.6 925,472 + PGA1_c08960 0.62 -0.0 925,625 + -0.9 925,632 - +0.4 925,633 - +0.4 925,699 + PGA1_c08970 0.18 -0.3 925,840 + -0.9 925,873 - +0.1 925,880 - -0.6 925,901 + -0.2 925,929 + -0.2 925,944 + +0.5 925,952 - -1.0 925,952 - -2.0 925,963 - +0.7 925,963 - -1.0 926,233 + +0.7 926,243 - +0.5 926,243 - -1.1 926,243 - -0.1 926,243 - +0.1 926,243 - +0.3 926,243 - +0.8 926,243 - -1.4 926,293 - +0.8 926,293 - -1.0 926,340 - PGA1_c08990 0.20 -3.2 926,439 + PGA1_c08990 0.51 +0.5 926,484 - PGA1_c08990 0.65 -0.3 926,484 - PGA1_c08990 0.65 -2.6 926,596 - -1.3
Or see this region's nucleotide sequence