Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00520 and PGA1_262p00530 are separated by 9 nucleotides PGA1_262p00530 and PGA1_262p00540 are separated by 74 nucleotides
PGA1_262p00520: PGA1_262p00520 - putative multi antimicrobial extrusion protein, at 59,832 to 61,166
_262p00520
PGA1_262p00530: PGA1_262p00530 - DNA topoisomerase 1B-like protein, at 61,176 to 62,153
_262p00530
PGA1_262p00540: PGA1_262p00540 - succinate-semialdehyde dehdyrogenase GabD, at 62,228 to 63,607
_262p00540
Position (kb) 61
62
63 Strain fitness (log2 ratio) -1
0
1 at 60.340 kb on - strand, within PGA1_262p00520 at 60.461 kb on + strand, within PGA1_262p00520 at 60.569 kb on - strand, within PGA1_262p00520 at 60.611 kb on + strand, within PGA1_262p00520 at 60.661 kb on + strand, within PGA1_262p00520 at 60.740 kb on + strand, within PGA1_262p00520 at 60.807 kb on + strand, within PGA1_262p00520 at 60.807 kb on + strand, within PGA1_262p00520 at 60.826 kb on + strand, within PGA1_262p00520 at 61.002 kb on + strand, within PGA1_262p00520 at 61.137 kb on + strand at 61.226 kb on - strand at 61.249 kb on + strand at 61.272 kb on - strand at 61.389 kb on + strand, within PGA1_262p00530 at 61.499 kb on + strand, within PGA1_262p00530 at 61.595 kb on + strand, within PGA1_262p00530 at 61.808 kb on - strand, within PGA1_262p00530 at 61.867 kb on - strand, within PGA1_262p00530 at 61.867 kb on - strand, within PGA1_262p00530 at 62.111 kb on + strand at 62.129 kb on - strand at 62.316 kb on + strand at 62.632 kb on + strand, within PGA1_262p00540 at 62.632 kb on + strand, within PGA1_262p00540 at 62.642 kb on + strand, within PGA1_262p00540 at 62.852 kb on + strand, within PGA1_262p00540 at 62.860 kb on - strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.997 kb on - strand, within PGA1_262p00540 at 62.997 kb on - strand, within PGA1_262p00540 at 62.997 kb on - strand, within PGA1_262p00540 at 63.015 kb on - strand, within PGA1_262p00540 at 63.054 kb on + strand, within PGA1_262p00540 at 63.124 kb on + strand, within PGA1_262p00540
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 60,340 - PGA1_262p00520 0.38 +0.1 60,461 + PGA1_262p00520 0.47 -0.7 60,569 - PGA1_262p00520 0.55 -1.1 60,611 + PGA1_262p00520 0.58 -0.4 60,661 + PGA1_262p00520 0.62 -0.7 60,740 + PGA1_262p00520 0.68 +0.3 60,807 + PGA1_262p00520 0.73 +0.6 60,807 + PGA1_262p00520 0.73 -0.1 60,826 + PGA1_262p00520 0.74 -1.7 61,002 + PGA1_262p00520 0.88 +0.5 61,137 + +0.3 61,226 - +0.3 61,249 + +1.5 61,272 - +1.2 61,389 + PGA1_262p00530 0.22 -0.5 61,499 + PGA1_262p00530 0.33 -0.6 61,595 + PGA1_262p00530 0.43 -0.8 61,808 - PGA1_262p00530 0.65 -0.7 61,867 - PGA1_262p00530 0.71 -1.0 61,867 - PGA1_262p00530 0.71 -0.3 62,111 + +0.3 62,129 - +0.5 62,316 + -0.6 62,632 + PGA1_262p00540 0.29 -0.3 62,632 + PGA1_262p00540 0.29 -1.4 62,642 + PGA1_262p00540 0.30 +0.6 62,852 + PGA1_262p00540 0.45 -1.3 62,860 - PGA1_262p00540 0.46 -0.2 62,989 + PGA1_262p00540 0.55 -0.2 62,989 + PGA1_262p00540 0.55 -0.7 62,989 + PGA1_262p00540 0.55 +1.0 62,989 + PGA1_262p00540 0.55 +1.3 62,989 + PGA1_262p00540 0.55 +1.1 62,997 - PGA1_262p00540 0.56 -0.3 62,997 - PGA1_262p00540 0.56 +0.2 62,997 - PGA1_262p00540 0.56 -0.7 63,015 - PGA1_262p00540 0.57 -0.7 63,054 + PGA1_262p00540 0.60 -0.4 63,124 + PGA1_262p00540 0.65 -0.9
Or see this region's nucleotide sequence