Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c34830

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
3,653,953	-		PGA1_c34820	0.48	-0.9
3,653,972	+		PGA1_c34820	0.49	-0.5
3,653,972	+		PGA1_c34820	0.49	-0.4
3,653,980	-		PGA1_c34820	0.49	-0.9
3,653,980	-		PGA1_c34820	0.49	-1.0
3,653,980	-		PGA1_c34820	0.49	+0.3
3,653,980	-		PGA1_c34820	0.49	+0.8
3,653,980	-		PGA1_c34820	0.49	+0.6
3,653,980	-		PGA1_c34820	0.49	+0.4
3,653,980	-		PGA1_c34820	0.49	+0.4
3,653,980	-		PGA1_c34820	0.49	+0.2
3,653,980	-		PGA1_c34820	0.49	+2.0
3,653,980	-		PGA1_c34820	0.49	+0.9
3,653,987	+		PGA1_c34820	0.50	+0.5
3,653,994	+		PGA1_c34820	0.50	-0.4
3,654,002	-		PGA1_c34820	0.50	-0.9
3,654,002	-		PGA1_c34820	0.50	+0.3
3,654,033	+		PGA1_c34820	0.52	-0.5
3,654,033	+		PGA1_c34820	0.52	+0.7
3,654,087	+		PGA1_c34820	0.55	+0.7
3,654,093	+		PGA1_c34820	0.55	-1.2
3,654,103	+		PGA1_c34820	0.56	-0.4
3,654,184	+		PGA1_c34820	0.60	+0.7
3,654,207	-		PGA1_c34820	0.61	-1.7
3,654,238	+		PGA1_c34820	0.63	+0.0
3,654,263	+		PGA1_c34820	0.64	-0.2
3,654,264	+		PGA1_c34820	0.64	-1.3
3,654,326	+		PGA1_c34820	0.68	+1.1
3,654,437	+		PGA1_c34820	0.74	-0.1
3,654,464	-		PGA1_c34820	0.75	+1.7
3,654,501	-		PGA1_c34820	0.77	-0.5
3,654,540	+		PGA1_c34820	0.79	-1.2
3,654,598	+		PGA1_c34820	0.82	+0.1
3,654,646	-		PGA1_c34820	0.85	-0.7
3,654,709	+		PGA1_c34820	0.88	+0.5
3,654,719	+		PGA1_c34820	0.89	-0.4
3,654,727	-		PGA1_c34820	0.89	+0.2
3,654,740	-		PGA1_c34820	0.90	+0.3
3,654,779	+				-0.7
3,654,787	-				-0.2
3,654,826	-				-0.2
3,654,835	+				-0.0
3,654,893	-				-0.3
3,654,936	+				+0.7
3,654,950	-				+0.7
3,654,974	+				-0.4
3,654,977	-				-0.4
3,654,983	+				-0.0
3,655,022	+				+0.7
3,655,056	-				-1.5
3,655,059	+				+0.7
3,655,105	+				-0.0
3,655,115	-		PGA1_c34830	0.10	-0.3
3,655,171	-		PGA1_c34830	0.13	+0.7
3,655,173	+		PGA1_c34830	0.13	-1.5
3,655,173	+		PGA1_c34830	0.13	-0.5
3,655,173	+		PGA1_c34830	0.13	-0.1
3,655,173	+		PGA1_c34830	0.13	+0.9
3,655,173	+		PGA1_c34830	0.13	-0.3
3,655,176	-		PGA1_c34830	0.14	+0.6
3,655,181	-		PGA1_c34830	0.14	-0.1
3,655,181	-		PGA1_c34830	0.14	-0.3
3,655,181	-		PGA1_c34830	0.14	+0.5
3,655,181	-		PGA1_c34830	0.14	-0.5
3,655,181	-		PGA1_c34830	0.14	-0.8
3,655,223	+		PGA1_c34830	0.16	+0.6
3,655,223	+		PGA1_c34830	0.16	-0.5
3,655,231	-		PGA1_c34830	0.17	+1.0
3,655,231	-		PGA1_c34830	0.17	-0.8
3,655,311	-		PGA1_c34830	0.21	-0.2
3,655,328	+		PGA1_c34830	0.22	+0.1
3,655,400	-		PGA1_c34830	0.26	+0.2
3,655,414	-		PGA1_c34830	0.27	+0.5
3,655,429	-		PGA1_c34830	0.27	-0.5
3,655,429	-		PGA1_c34830	0.27	-0.1
3,655,431	+		PGA1_c34830	0.27	-0.3
3,655,444	-		PGA1_c34830	0.28	-1.0
3,655,447	-		PGA1_c34830	0.28	-0.4
3,655,457	-		PGA1_c34830	0.29	+0.6
3,655,480	-		PGA1_c34830	0.30	-0.6
3,655,480	-		PGA1_c34830	0.30	-0.7
3,655,513	-		PGA1_c34830	0.32	+0.5
3,655,528	-		PGA1_c34830	0.33	-0.1
3,655,556	-		PGA1_c34830	0.34	-0.6
3,655,581	+		PGA1_c34830	0.36	-1.2
3,655,616	+		PGA1_c34830	0.38	-0.7
3,655,625	+		PGA1_c34830	0.38	-1.1
3,655,629	-		PGA1_c34830	0.38	-0.5
3,655,647	-		PGA1_c34830	0.39	-1.0
3,655,686	-		PGA1_c34830	0.41	-0.1
3,655,699	+		PGA1_c34830	0.42	-1.4
3,655,699	+		PGA1_c34830	0.42	+0.3
3,655,708	+		PGA1_c34830	0.43	-0.3
3,655,716	-		PGA1_c34830	0.43	-1.2
3,655,769	-		PGA1_c34830	0.46	+0.2
3,655,851	+		PGA1_c34830	0.50	+1.2
3,655,876	+		PGA1_c34830	0.52	-2.4
3,655,876	+		PGA1_c34830	0.52	+0.2
3,655,918	-		PGA1_c34830	0.54	+0.4
3,655,968	+		PGA1_c34830	0.57	+0.3
3,655,973	-		PGA1_c34830	0.57	+0.4
3,655,976	-		PGA1_c34830	0.57	-0.8
3,656,011	+		PGA1_c34830	0.59	-0.1
3,656,048	-		PGA1_c34830	0.61	-0.3
3,656,095	-		PGA1_c34830	0.64	-0.5
3,656,095	-		PGA1_c34830	0.64	+0.6
3,656,112	-		PGA1_c34830	0.64	+0.4
3,656,132	-		PGA1_c34830	0.66	-1.9
3,656,173	+		PGA1_c34830	0.68	+1.6
3,656,173	+		PGA1_c34830	0.68	-0.3
3,656,209	+		PGA1_c34830	0.70	-0.8
3,656,266	+		PGA1_c34830	0.73	+1.0
3,656,274	-		PGA1_c34830	0.73	+0.9
3,656,274	-		PGA1_c34830	0.73	+1.1
3,656,324	-		PGA1_c34830	0.76	+1.2
3,656,326	+		PGA1_c34830	0.76	-0.3
3,656,329	-		PGA1_c34830	0.76	+0.5
3,656,334	-		PGA1_c34830	0.77	-0.2
3,656,334	-		PGA1_c34830	0.77	+0.2
3,656,334	-		PGA1_c34830	0.77	+0.1
3,656,334	-		PGA1_c34830	0.77	+0.0
3,656,380	-		PGA1_c34830	0.79	+0.3
3,656,389	+		PGA1_c34830	0.80	-0.1
3,656,412	-		PGA1_c34830	0.81	-0.1
3,656,484	+		PGA1_c34830	0.85	-1.0
3,656,513	+		PGA1_c34830	0.86	+0.2
3,656,536	+		PGA1_c34830	0.88	-1.1
3,656,556	+		PGA1_c34830	0.89	-0.9
3,656,556	+		PGA1_c34830	0.89	-0.6
3,656,561	+		PGA1_c34830	0.89	+0.2
3,656,564	+		PGA1_c34830	0.89	-0.5
3,656,662	+				+0.9
3,656,662	+				+0.5
3,656,662	+				+1.0
3,656,662	+				-0.1
3,656,667	+				+0.0
3,656,670	-				+2.2
3,656,685	+				-0.6
3,656,712	+				-0.3
3,656,722	+				+0.1
3,656,798	-				+0.4
3,656,819	-				+0.5
3,656,826	-				+1.0
3,656,846	+				-0.9
3,656,846	+				-0.0
3,656,846	+				+0.2
3,656,846	+				-1.1
3,656,846	+				-2.1
3,656,846	+				-1.4
3,656,846	+				-1.0
3,656,846	+				+0.9
3,656,846	+				+0.2
3,656,846	+				-0.5
3,656,846	+				-0.0
3,656,846	+				-0.1
3,656,851	+				+1.4
3,656,851	+				+0.0
3,656,851	+				+0.6
3,656,853	+				+0.2
3,656,854	-				+0.1
3,656,854	-				+1.0
3,656,854	-				+0.3
3,656,854	-				+1.2
3,656,854	-				+0.1
3,656,854	-				-1.0
3,656,854	-				-0.4
3,656,854	-				-0.8
3,656,854	-				-0.1
3,656,854	-				-0.3
3,656,854	-				-0.1
3,656,854	-				-0.3
3,656,854	-				-0.4
3,656,859	-				-0.1
3,656,859	-				-0.2
3,656,859	-				-0.7
3,656,859	-				-1.2
3,656,894	+				-0.3
3,656,910	+				-0.4
3,656,910	+				+1.0
3,656,918	-				-1.1
3,656,974	+				+0.1
3,656,974	+				+0.3
3,656,982	-				-0.8
3,656,982	-				-0.5