Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2231 and HP15_2232 are separated by 99 nucleotides HP15_2232 and HP15_2233 are separated by 115 nucleotides
HP15_2231: HP15_2231 - pitrilysin metallopeptidase 1, at 2,348,903 to 2,351,827
_2231
HP15_2232: HP15_2232 - conserved hypothetical protein, membrane, at 2,351,927 to 2,352,388
_2232
HP15_2233: HP15_2233 - MORN repeat protein, at 2,352,504 to 2,353,817
_2233
Position (kb)
2351
2352
2353 Strain fitness (log2 ratio)
-2
-1
0
1 at 2350.995 kb on + strand, within HP15_2231 at 2350.995 kb on + strand, within HP15_2231 at 2351.005 kb on + strand, within HP15_2231 at 2351.005 kb on + strand, within HP15_2231 at 2351.005 kb on + strand, within HP15_2231 at 2351.005 kb on + strand, within HP15_2231 at 2351.005 kb on + strand, within HP15_2231 at 2351.008 kb on - strand, within HP15_2231 at 2351.010 kb on + strand, within HP15_2231 at 2351.010 kb on + strand, within HP15_2231 at 2351.013 kb on - strand, within HP15_2231 at 2351.013 kb on - strand, within HP15_2231 at 2351.013 kb on - strand, within HP15_2231 at 2351.018 kb on - strand, within HP15_2231 at 2351.018 kb on - strand, within HP15_2231 at 2351.092 kb on + strand, within HP15_2231 at 2351.287 kb on + strand, within HP15_2231 at 2351.287 kb on + strand, within HP15_2231 at 2351.495 kb on + strand, within HP15_2231 at 2351.495 kb on + strand, within HP15_2231 at 2351.495 kb on + strand, within HP15_2231 at 2351.503 kb on - strand, within HP15_2231 at 2351.622 kb on - strand at 2351.748 kb on - strand at 2351.800 kb on - strand at 2351.905 kb on + strand at 2351.905 kb on - strand at 2351.914 kb on - strand at 2351.921 kb on - strand at 2352.056 kb on - strand, within HP15_2232 at 2352.144 kb on + strand, within HP15_2232 at 2352.165 kb on + strand, within HP15_2232 at 2352.353 kb on - strand at 2352.442 kb on - strand at 2352.562 kb on - strand at 2352.692 kb on + strand, within HP15_2233 at 2352.705 kb on - strand, within HP15_2233 at 2352.711 kb on + strand, within HP15_2233 at 2352.775 kb on + strand, within HP15_2233 at 2352.775 kb on + strand, within HP15_2233 at 2352.999 kb on - strand, within HP15_2233 at 2353.026 kb on + strand, within HP15_2233 at 2353.180 kb on + strand, within HP15_2233 at 2353.256 kb on + strand, within HP15_2233 at 2353.303 kb on - strand, within HP15_2233 at 2353.303 kb on - strand, within HP15_2233
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 2,350,995 + HP15_2231 0.72 -0.1 2,350,995 + HP15_2231 0.72 +0.4 2,351,005 + HP15_2231 0.72 -0.2 2,351,005 + HP15_2231 0.72 -0.0 2,351,005 + HP15_2231 0.72 -0.4 2,351,005 + HP15_2231 0.72 -0.7 2,351,005 + HP15_2231 0.72 -1.2 2,351,008 - HP15_2231 0.72 +0.0 2,351,010 + HP15_2231 0.72 -0.2 2,351,010 + HP15_2231 0.72 -0.3 2,351,013 - HP15_2231 0.72 +0.2 2,351,013 - HP15_2231 0.72 -0.4 2,351,013 - HP15_2231 0.72 -0.1 2,351,018 - HP15_2231 0.72 -0.1 2,351,018 - HP15_2231 0.72 -0.0 2,351,092 + HP15_2231 0.75 -0.6 2,351,287 + HP15_2231 0.82 -0.5 2,351,287 + HP15_2231 0.82 -1.4 2,351,495 + HP15_2231 0.89 -0.5 2,351,495 + HP15_2231 0.89 +0.3 2,351,495 + HP15_2231 0.89 -1.9 2,351,503 - HP15_2231 0.89 -1.1 2,351,622 - -0.4 2,351,748 - -0.1 2,351,800 - -0.7 2,351,905 + +0.3 2,351,905 - +0.1 2,351,914 - +0.4 2,351,921 - -0.1 2,352,056 - HP15_2232 0.28 +0.4 2,352,144 + HP15_2232 0.47 +0.0 2,352,165 + HP15_2232 0.52 +0.1 2,352,353 - -0.4 2,352,442 - -0.2 2,352,562 - +0.2 2,352,692 + HP15_2233 0.14 +1.2 2,352,705 - HP15_2233 0.15 -0.1 2,352,711 + HP15_2233 0.16 +0.3 2,352,775 + HP15_2233 0.21 -0.7 2,352,775 + HP15_2233 0.21 -0.5 2,352,999 - HP15_2233 0.38 +1.0 2,353,026 + HP15_2233 0.40 +1.0 2,353,180 + HP15_2233 0.51 -0.2 2,353,256 + HP15_2233 0.57 -0.1 2,353,303 - HP15_2233 0.61 +0.1 2,353,303 - HP15_2233 0.61 -0.4
Or see this region's nucleotide sequence