Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c22790

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
2,362,337	-				-0.9
2,362,431	+		PGA1_c22780	0.16	-0.3
2,362,478	-		PGA1_c22780	0.20	-0.0
2,362,503	+		PGA1_c22780	0.23	+0.4
2,362,553	+		PGA1_c22780	0.27	+0.1
2,362,588	-		PGA1_c22780	0.31	+0.5
2,362,618	-		PGA1_c22780	0.33	-0.3
2,362,641	+		PGA1_c22780	0.36	+0.8
2,362,645	-		PGA1_c22780	0.36	-0.9
2,362,663	+		PGA1_c22780	0.38	+0.3
2,362,718	+		PGA1_c22780	0.43	+1.0
2,362,726	-		PGA1_c22780	0.44	-0.3
2,362,806	-		PGA1_c22780	0.51	-0.3
2,362,815	-		PGA1_c22780	0.52	-0.4
2,362,835	+		PGA1_c22780	0.54	+0.3
2,362,843	-		PGA1_c22780	0.55	+0.2
2,362,843	-		PGA1_c22780	0.55	+0.5
2,362,843	-		PGA1_c22780	0.55	-0.4
2,362,855	+		PGA1_c22780	0.56	-0.4
2,362,855	+		PGA1_c22780	0.56	-1.8
2,362,863	-		PGA1_c22780	0.57	-0.2
2,362,863	-		PGA1_c22780	0.57	+0.8
2,362,863	-		PGA1_c22780	0.57	+0.9
2,362,930	+		PGA1_c22780	0.63	-0.9
2,363,020	-		PGA1_c22780	0.71	-1.9
2,363,020	-		PGA1_c22780	0.71	+0.5
2,363,035	-		PGA1_c22780	0.73	+0.2
2,363,048	+		PGA1_c22780	0.74	-0.8
2,363,053	+		PGA1_c22780	0.75	-1.6
2,363,095	+		PGA1_c22780	0.78	-1.5
2,363,116	+		PGA1_c22780	0.80	+0.3
2,363,117	+		PGA1_c22780	0.81	+0.1
2,363,137	+		PGA1_c22780	0.82	+0.2
2,363,161	+		PGA1_c22780	0.85	+0.0
2,363,218	+				-0.6
2,363,230	+				+0.4
2,363,230	+				+0.4
2,363,238	-				-0.7
2,363,247	-				+0.5
2,363,247	-				-0.5
2,363,251	+				-0.5
2,363,375	+				+0.0
2,363,375	+				+0.5
2,363,375	+				+0.4
2,363,383	-				+0.2
2,363,383	-				+0.4
2,363,417	-				+0.2
2,363,435	+				-0.0
2,363,632	-		PGA1_c22790	0.29	-0.1
2,363,643	+		PGA1_c22790	0.30	+0.8
2,363,682	-		PGA1_c22790	0.34	-1.2
2,363,714	-		PGA1_c22790	0.37	+0.3
2,363,788	+		PGA1_c22790	0.44	+1.8
2,363,788	+		PGA1_c22790	0.44	+0.5
2,363,789	+		PGA1_c22790	0.44	-0.2
2,363,789	+		PGA1_c22790	0.44	+1.1
2,363,796	-		PGA1_c22790	0.45	-0.4
2,363,831	+		PGA1_c22790	0.48	+0.3
2,363,845	-		PGA1_c22790	0.50	+1.0
2,363,845	-		PGA1_c22790	0.50	+0.6
2,363,869	+		PGA1_c22790	0.52	-0.4
2,363,872	-		PGA1_c22790	0.52	+0.8
2,363,882	-		PGA1_c22790	0.53	-0.1
2,363,911	+		PGA1_c22790	0.56	-2.0
2,363,911	+		PGA1_c22790	0.56	+0.4
2,363,911	+		PGA1_c22790	0.56	+1.7
2,363,919	-		PGA1_c22790	0.57	-2.0
2,363,919	-		PGA1_c22790	0.57	-0.5
2,363,952	+		PGA1_c22790	0.60	+1.0
2,363,982	-		PGA1_c22790	0.63	-0.1
2,363,991	+		PGA1_c22790	0.64	+0.7
2,364,041	-		PGA1_c22790	0.69	-0.5
2,364,050	+		PGA1_c22790	0.69	+0.7
2,364,058	-		PGA1_c22790	0.70	-1.2
2,364,080	+		PGA1_c22790	0.72	+0.3
2,364,093	-		PGA1_c22790	0.74	+0.3
2,364,116	+		PGA1_c22790	0.76	-0.1
2,364,124	-		PGA1_c22790	0.77	+0.8
2,364,146	-		PGA1_c22790	0.79	+1.1
2,364,180	+		PGA1_c22790	0.82	+0.4
2,364,237	+		PGA1_c22790	0.88	+0.8
2,364,237	+		PGA1_c22790	0.88	+0.8
2,364,237	+		PGA1_c22790	0.88	+0.3
2,364,237	+		PGA1_c22790	0.88	+0.7
2,364,244	+		PGA1_c22790	0.88	-0.2
2,364,245	-		PGA1_c22790	0.88	+0.8
2,364,245	-		PGA1_c22790	0.88	-0.0
2,364,245	-		PGA1_c22790	0.88	-0.6
2,364,245	-		PGA1_c22790	0.88	+0.2
2,364,245	-		PGA1_c22790	0.88	+0.3
2,364,247	-		PGA1_c22790	0.89	-0.5
2,364,247	-		PGA1_c22790	0.89	+1.8
2,364,252	-		PGA1_c22790	0.89	+0.4
2,364,383	+				-0.7
2,364,393	+				-1.4
2,364,399	-				+0.4
2,364,399	-				+0.2
2,364,410	+				+0.8
2,364,414	+				+0.8
2,364,429	+				-0.3
2,364,432	-				-1.8
2,364,463	+				-1.2
2,364,483	+				+2.2
2,364,493	+				-1.6
2,364,500	-				+0.7
2,364,501	-				+0.0
2,364,512	+				-0.3
2,364,552	+		PGA1_c22800	0.12	-0.2
2,364,560	-		PGA1_c22800	0.13	+0.7
2,364,572	+		PGA1_c22800	0.15	+0.0
2,364,582	-				+0.3
2,364,590	+		PGA1_c22800	0.16	+0.2
2,364,590	+		PGA1_c22800	0.16	-0.6
2,364,659	-		PGA1_c22800	0.23	-0.5
2,364,666	-		PGA1_c22800	0.24	+1.1
2,364,670	+		PGA1_c22800	0.25	-0.3
2,364,685	-		PGA1_c22800	0.26	+0.2
2,364,733	+		PGA1_c22800	0.31	-1.2
2,364,752	+		PGA1_c22800	0.33	+0.6
2,364,778	+		PGA1_c22800	0.36	-0.6
2,364,778	+		PGA1_c22800	0.36	+0.0
2,364,778	+		PGA1_c22800	0.36	+0.2
2,364,786	-		PGA1_c22800	0.37	-0.9
2,364,786	-		PGA1_c22800	0.37	-0.7
2,364,854	+		PGA1_c22800	0.44	-0.1
2,364,854	+		PGA1_c22800	0.44	+1.0
2,364,859	+		PGA1_c22800	0.44	-0.3
2,364,862	-		PGA1_c22800	0.44	+0.7
2,364,862	-		PGA1_c22800	0.44	-0.3
2,364,909	+		PGA1_c22800	0.49	-1.2
2,364,917	-		PGA1_c22800	0.50	-1.1
2,364,919	+		PGA1_c22800	0.50	+1.2
2,364,937	+		PGA1_c22800	0.52	+0.5
2,364,941	+		PGA1_c22800	0.52	-1.2
2,364,949	-		PGA1_c22800	0.53	+0.3
2,364,957	-		PGA1_c22800	0.54	-1.3
2,364,982	+		PGA1_c22800	0.57	-0.4
2,365,001	+		PGA1_c22800	0.59	+0.8
2,365,001	+		PGA1_c22800	0.59	-0.3
2,365,011	-		PGA1_c22800	0.60	-1.0
2,365,066	-		PGA1_c22800	0.65	-0.5
2,365,066	-		PGA1_c22800	0.65	-0.0
2,365,198	+		PGA1_c22800	0.79	-0.4
2,365,198	+		PGA1_c22800	0.79	+0.6
2,365,206	-		PGA1_c22800	0.80	-0.2
2,365,211	-		PGA1_c22800	0.80	+0.4
2,365,227	-		PGA1_c22800	0.82	-1.3
2,365,231	+		PGA1_c22800	0.82	+1.1
2,365,238	+		PGA1_c22800	0.83	+0.5
2,365,238	+		PGA1_c22800	0.83	-2.4
2,365,246	-		PGA1_c22800	0.84	-0.5
2,365,246	-		PGA1_c22800	0.84	+0.4
2,365,246	-		PGA1_c22800	0.84	-1.0
2,365,285	+		PGA1_c22800	0.88	+0.7
2,365,285	+		PGA1_c22800	0.88	+0.2
2,365,318	+				-0.3
2,365,318	+				-0.2
2,365,320	+				-0.2
2,365,330	+				+1.1
2,365,338	-				-0.5