Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c16630

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
1,729,108	-		PGA1_c16620	0.53	-0.5
1,729,178	+		PGA1_c16620	0.57	+0.9
1,729,178	+		PGA1_c16620	0.57	-1.9
1,729,196	-		PGA1_c16620	0.58	+0.5
1,729,201	-		PGA1_c16620	0.58	+0.9
1,729,208	+		PGA1_c16620	0.58	+0.5
1,729,231	+		PGA1_c16620	0.60	-0.6
1,729,241	+		PGA1_c16620	0.60	-0.4
1,729,241	+		PGA1_c16620	0.60	-0.0
1,729,244	+		PGA1_c16620	0.60	-0.7
1,729,249	-		PGA1_c16620	0.61	-0.3
1,729,263	+		PGA1_c16620	0.62	-0.7
1,729,271	-		PGA1_c16620	0.62	+0.7
1,729,271	-		PGA1_c16620	0.62	+0.2
1,729,271	-		PGA1_c16620	0.62	+0.7
1,729,302	+		PGA1_c16620	0.64	+0.5
1,729,355	+		PGA1_c16620	0.67	+0.7
1,729,374	+		PGA1_c16620	0.68	-0.3
1,729,434	+		PGA1_c16620	0.71	-0.7
1,729,456	+		PGA1_c16620	0.72	-1.6
1,729,459	-		PGA1_c16620	0.73	-0.4
1,729,490	+		PGA1_c16620	0.74	+0.6
1,729,573	-		PGA1_c16620	0.79	+0.0
1,729,583	+		PGA1_c16620	0.80	-0.9
1,729,583	+		PGA1_c16620	0.80	-0.9
1,729,591	-		PGA1_c16620	0.80	+0.0
1,729,591	-		PGA1_c16620	0.80	-0.8
1,729,591	-		PGA1_c16620	0.80	+0.0
1,729,605	+		PGA1_c16620	0.81	+0.2
1,729,636	+		PGA1_c16620	0.83	-0.8
1,729,684	+		PGA1_c16620	0.85	-1.0
1,729,695	+		PGA1_c16620	0.86	+0.2
1,729,775	+				-1.5
1,729,775	+				+0.0
1,729,775	+				+0.6
1,729,783	-				-0.7
1,729,829	-				-0.8
1,729,891	-				+0.2
1,729,894	+				-0.8
1,729,936	+				+0.8
1,730,041	-				-0.7
1,730,082	+				-0.4
1,730,108	+				+0.9
1,730,108	+				+0.7
1,730,125	-				+0.2
1,730,130	+				+0.4
1,730,130	+				+0.9
1,730,130	+				-0.1
1,730,130	+				-0.0
1,730,130	+				+0.4
1,730,130	+				+0.1
1,730,131	-				-1.9
1,730,138	-				-1.5
1,730,138	-				-0.2
1,730,153	+				-0.8
1,730,153	+				-0.7
1,730,153	+				-0.8
1,730,153	+				+0.2
1,730,153	+				-1.2
1,730,153	+				+0.1
1,730,161	-				-0.1
1,730,161	-				+0.0
1,730,161	-				-1.0
1,730,161	-				+0.8
1,730,162	-				-0.0
1,730,185	-				+0.5
1,730,219	+				-0.2
1,730,219	+				-0.7
1,730,219	+				-0.6
1,730,219	+				+0.4
1,730,227	-		PGA1_c16630	0.10	+0.8
1,730,227	-		PGA1_c16630	0.10	+1.3
1,730,227	-		PGA1_c16630	0.10	+0.4
1,730,227	-		PGA1_c16630	0.10	-0.8
1,730,227	-		PGA1_c16630	0.10	-1.4
1,730,227	-		PGA1_c16630	0.10	+0.2
1,730,227	-		PGA1_c16630	0.10	-0.6
1,730,227	-		PGA1_c16630	0.10	-0.5
1,730,240	-		PGA1_c16630	0.11	+0.2
1,730,256	+		PGA1_c16630	0.12	-0.7
1,730,262	+		PGA1_c16630	0.13	-1.0
1,730,304	-		PGA1_c16630	0.16	-0.2
1,730,310	+		PGA1_c16630	0.16	+0.5
1,730,310	+		PGA1_c16630	0.16	-0.4
1,730,310	+		PGA1_c16630	0.16	-1.1
1,730,310	+		PGA1_c16630	0.16	+0.9
1,730,310	+		PGA1_c16630	0.16	-0.0
1,730,310	+		PGA1_c16630	0.16	+0.1
1,730,310	+		PGA1_c16630	0.16	+0.7
1,730,310	+		PGA1_c16630	0.16	+0.6
1,730,315	+		PGA1_c16630	0.16	-1.1
1,730,315	+		PGA1_c16630	0.16	-1.1
1,730,318	-		PGA1_c16630	0.17	+0.6
1,730,318	-		PGA1_c16630	0.17	+1.8
1,730,318	-		PGA1_c16630	0.17	+0.5
1,730,318	-		PGA1_c16630	0.17	+1.5
1,730,318	-		PGA1_c16630	0.17	-0.5
1,730,318	-		PGA1_c16630	0.17	+0.9
1,730,338	-		PGA1_c16630	0.18	+0.2
1,730,405	+		PGA1_c16630	0.23	-0.3
1,730,411	+		PGA1_c16630	0.23	+0.6
1,730,413	-		PGA1_c16630	0.23	+0.8
1,730,433	-		PGA1_c16630	0.25	-1.0
1,730,460	+		PGA1_c16630	0.26	+0.1
1,730,493	+		PGA1_c16630	0.29	-0.2
1,730,493	+		PGA1_c16630	0.29	+0.5
1,730,511	-		PGA1_c16630	0.30	-0.3
1,730,525	-		PGA1_c16630	0.31	-0.6
1,730,549	+		PGA1_c16630	0.33	-0.1
1,730,557	-		PGA1_c16630	0.33	+0.0
1,730,564	-		PGA1_c16630	0.34	-0.8
1,730,631	+		PGA1_c16630	0.38	+0.5
1,730,639	-		PGA1_c16630	0.39	-0.4
1,730,822	+		PGA1_c16630	0.51	+0.8
1,730,862	-		PGA1_c16630	0.54	+0.5
1,730,933	-		PGA1_c16630	0.59	+0.1
1,730,933	-		PGA1_c16630	0.59	+0.6
1,730,933	-		PGA1_c16630	0.59	-0.0
1,730,943	+		PGA1_c16630	0.60	-0.3
1,730,949	+		PGA1_c16630	0.60	+0.5
1,731,054	+		PGA1_c16630	0.67	+0.0
1,731,151	+		PGA1_c16630	0.74	+0.6
1,731,161	-		PGA1_c16630	0.75	+0.4
1,731,172	-		PGA1_c16630	0.76	-0.9
1,731,220	-		PGA1_c16630	0.79	+1.6
1,731,271	-		PGA1_c16630	0.83	+0.6
1,731,275	+		PGA1_c16630	0.83	+0.0
1,731,276	-		PGA1_c16630	0.83	+0.5
1,731,302	+		PGA1_c16630	0.85	+0.4
1,731,302	+		PGA1_c16630	0.85	+0.2
1,731,344	-		PGA1_c16630	0.88	+0.7
1,731,404	-				-0.5
1,731,475	+				+0.1
1,731,489	+				-0.7
1,731,497	+				+0.7
1,731,497	+				-0.0
1,731,530	+				-0.7
1,731,539	+				+0.6
1,731,539	+				+0.3
1,731,539	-				-1.0
1,731,547	-				-1.4
1,731,547	-				+0.9
1,731,547	-				-0.5
1,731,547	-				+2.3
1,731,616	-				+0.5
1,731,724	+				-0.9
1,731,732	-				-0.9
1,731,868	+		PGA1_c16640	0.11	+0.2
1,731,877	+		PGA1_c16640	0.11	-0.3
1,731,897	-		PGA1_c16640	0.12	-0.7
1,731,969	+		PGA1_c16640	0.14	+0.4
1,732,143	-		PGA1_c16640	0.20	-0.8
1,732,226	+		PGA1_c16640	0.23	+0.3
1,732,233	-		PGA1_c16640	0.23	+0.7
1,732,258	+		PGA1_c16640	0.24	-0.3
1,732,311	+		PGA1_c16640	0.26	+0.6
1,732,366	-		PGA1_c16640	0.27	-0.7
1,732,375	+		PGA1_c16640	0.28	-1.5
1,732,380	+		PGA1_c16640	0.28	-0.4
1,732,390	+		PGA1_c16640	0.28	-0.1
1,732,398	-		PGA1_c16640	0.28	+0.1
1,732,521	-		PGA1_c16640	0.33	+1.0