Experiment: LB, pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26765 and BWI76_RS26770 are separated by 436 nucleotides BWI76_RS26770 and BWI76_RS26775 overlap by 19 nucleotides
BWI76_RS26765: BWI76_RS26765 - phosphodiesterase, at 5,543,932 to 5,545,938
_RS26765
BWI76_RS26770: BWI76_RS26770 - cellulose biosynthesis protein BcsC, at 5,546,375 to 5,549,860
_RS26770
BWI76_RS26775: BWI76_RS26775 - endo-1,4-D-glucanase, at 5,549,842 to 5,550,951
_RS26775
Position (kb)
5546
5547
5548
5549
5550 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5545.562 kb on - strand, within BWI76_RS26765 at 5545.675 kb on + strand, within BWI76_RS26765 at 5545.735 kb on - strand, within BWI76_RS26765 at 5545.735 kb on - strand, within BWI76_RS26765 at 5545.756 kb on - strand at 5545.795 kb on + strand at 5545.859 kb on - strand at 5545.859 kb on - strand at 5546.102 kb on + strand at 5546.483 kb on - strand at 5546.592 kb on + strand at 5546.613 kb on + strand at 5546.661 kb on + strand at 5546.669 kb on - strand at 5546.746 kb on - strand, within BWI76_RS26770 at 5546.757 kb on + strand, within BWI76_RS26770 at 5546.802 kb on - strand, within BWI76_RS26770 at 5546.802 kb on - strand, within BWI76_RS26770 at 5546.802 kb on - strand, within BWI76_RS26770 at 5546.970 kb on + strand, within BWI76_RS26770 at 5546.982 kb on + strand, within BWI76_RS26770 at 5547.054 kb on + strand, within BWI76_RS26770 at 5547.126 kb on - strand, within BWI76_RS26770 at 5547.412 kb on - strand, within BWI76_RS26770 at 5547.427 kb on + strand, within BWI76_RS26770 at 5547.821 kb on - strand, within BWI76_RS26770 at 5548.029 kb on + strand, within BWI76_RS26770 at 5548.161 kb on - strand, within BWI76_RS26770 at 5548.205 kb on - strand, within BWI76_RS26770 at 5548.205 kb on - strand, within BWI76_RS26770 at 5548.257 kb on + strand, within BWI76_RS26770 at 5548.340 kb on + strand, within BWI76_RS26770 at 5548.450 kb on - strand, within BWI76_RS26770 at 5548.594 kb on + strand, within BWI76_RS26770 at 5548.614 kb on + strand, within BWI76_RS26770 at 5548.787 kb on - strand, within BWI76_RS26770 at 5548.815 kb on + strand, within BWI76_RS26770 at 5548.917 kb on + strand, within BWI76_RS26770 at 5548.917 kb on + strand, within BWI76_RS26770 at 5548.925 kb on - strand, within BWI76_RS26770 at 5549.185 kb on - strand, within BWI76_RS26770 at 5549.567 kb on - strand at 5549.668 kb on + strand at 5549.771 kb on + strand at 5549.832 kb on - strand at 5549.938 kb on + strand at 5549.961 kb on - strand, within BWI76_RS26775 at 5550.115 kb on + strand, within BWI76_RS26775 at 5550.227 kb on - strand, within BWI76_RS26775 at 5550.407 kb on - strand, within BWI76_RS26775 at 5550.585 kb on - strand, within BWI76_RS26775 at 5550.594 kb on + strand, within BWI76_RS26775 at 5550.627 kb on - strand, within BWI76_RS26775 at 5550.637 kb on - strand, within BWI76_RS26775 at 5550.639 kb on - strand, within BWI76_RS26775 at 5550.726 kb on + strand, within BWI76_RS26775 at 5550.763 kb on + strand, within BWI76_RS26775 at 5550.768 kb on + strand, within BWI76_RS26775
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH10 remove 5,545,562 - BWI76_RS26765 0.81 -0.5 5,545,675 + BWI76_RS26765 0.87 +0.2 5,545,735 - BWI76_RS26765 0.90 +0.1 5,545,735 - BWI76_RS26765 0.90 +2.5 5,545,756 - -0.7 5,545,795 + +1.7 5,545,859 - -0.7 5,545,859 - -0.0 5,546,102 + -0.4 5,546,483 - +0.0 5,546,592 + -1.7 5,546,613 + +0.8 5,546,661 + -1.4 5,546,669 - -0.7 5,546,746 - BWI76_RS26770 0.11 -1.5 5,546,757 + BWI76_RS26770 0.11 -1.8 5,546,802 - BWI76_RS26770 0.12 -1.9 5,546,802 - BWI76_RS26770 0.12 -1.7 5,546,802 - BWI76_RS26770 0.12 -0.7 5,546,970 + BWI76_RS26770 0.17 +0.5 5,546,982 + BWI76_RS26770 0.17 -1.4 5,547,054 + BWI76_RS26770 0.19 -0.5 5,547,126 - BWI76_RS26770 0.22 -0.8 5,547,412 - BWI76_RS26770 0.30 -0.2 5,547,427 + BWI76_RS26770 0.30 -1.6 5,547,821 - BWI76_RS26770 0.41 -1.6 5,548,029 + BWI76_RS26770 0.47 -1.4 5,548,161 - BWI76_RS26770 0.51 -0.3 5,548,205 - BWI76_RS26770 0.52 +2.1 5,548,205 - BWI76_RS26770 0.52 -1.5 5,548,257 + BWI76_RS26770 0.54 -2.0 5,548,340 + BWI76_RS26770 0.56 -1.2 5,548,450 - BWI76_RS26770 0.60 -0.6 5,548,594 + BWI76_RS26770 0.64 -0.1 5,548,614 + BWI76_RS26770 0.64 -1.5 5,548,787 - BWI76_RS26770 0.69 -0.6 5,548,815 + BWI76_RS26770 0.70 +0.1 5,548,917 + BWI76_RS26770 0.73 -0.8 5,548,917 + BWI76_RS26770 0.73 +0.1 5,548,925 - BWI76_RS26770 0.73 -1.7 5,549,185 - BWI76_RS26770 0.81 -2.8 5,549,567 - -1.0 5,549,668 + -1.6 5,549,771 + -0.7 5,549,832 - -0.8 5,549,938 + -3.5 5,549,961 - BWI76_RS26775 0.11 +0.4 5,550,115 + BWI76_RS26775 0.25 -1.7 5,550,227 - BWI76_RS26775 0.35 -1.4 5,550,407 - BWI76_RS26775 0.51 -2.3 5,550,585 - BWI76_RS26775 0.67 -3.7 5,550,594 + BWI76_RS26775 0.68 +1.1 5,550,627 - BWI76_RS26775 0.71 -0.9 5,550,637 - BWI76_RS26775 0.72 -0.7 5,550,639 - BWI76_RS26775 0.72 -3.6 5,550,726 + BWI76_RS26775 0.80 -0.7 5,550,763 + BWI76_RS26775 0.83 -3.0 5,550,768 + BWI76_RS26775 0.83 -1.2
Or see this region's nucleotide sequence