Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11535

Experiment: LB, pH10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS11530 and BWI76_RS11535 are separated by 324 nucleotidesBWI76_RS11535 and BWI76_RS11540 are separated by 26 nucleotides BWI76_RS11530: BWI76_RS11530 - chitinase, at 2,425,054 to 2,426,307 _RS11530 BWI76_RS11535: BWI76_RS11535 - putative oxidoreductase, Zn-dependent and NAD(P)-binding protein, at 2,426,632 to 2,427,708 _RS11535 BWI76_RS11540: BWI76_RS11540 - MFS transporter, at 2,427,735 to 2,429,114 _RS11540 Position (kb) 2426 2427 2428Strain fitness (log2 ratio) -1 0 1 2at 2425.646 kb on - strand, within BWI76_RS11530at 2425.753 kb on + strand, within BWI76_RS11530at 2425.924 kb on + strand, within BWI76_RS11530at 2426.128 kb on - strand, within BWI76_RS11530at 2426.467 kb on + strandat 2427.190 kb on - strand, within BWI76_RS11535at 2427.342 kb on + strand, within BWI76_RS11535at 2427.510 kb on + strand, within BWI76_RS11535at 2427.579 kb on - strand, within BWI76_RS11535at 2427.617 kb on + strandat 2427.951 kb on - strand, within BWI76_RS11540at 2428.061 kb on + strand, within BWI76_RS11540at 2428.177 kb on + strand, within BWI76_RS11540at 2428.207 kb on + strand, within BWI76_RS11540at 2428.228 kb on - strand, within BWI76_RS11540at 2428.240 kb on + strand, within BWI76_RS11540at 2428.240 kb on + strand, within BWI76_RS11540at 2428.240 kb on + strand, within BWI76_RS11540at 2428.248 kb on - strand, within BWI76_RS11540at 2428.248 kb on - strand, within BWI76_RS11540at 2428.276 kb on + strand, within BWI76_RS11540at 2428.276 kb on - strand, within BWI76_RS11540at 2428.308 kb on + strandat 2428.374 kb on - strand, within BWI76_RS11540at 2428.407 kb on + strand, within BWI76_RS11540at 2428.413 kb on - strand, within BWI76_RS11540at 2428.471 kb on + strand, within BWI76_RS11540at 2428.490 kb on + strand, within BWI76_RS11540at 2428.490 kb on + strand, within BWI76_RS11540at 2428.503 kb on - strand, within BWI76_RS11540at 2428.505 kb on + strand, within BWI76_RS11540at 2428.513 kb on + strand, within BWI76_RS11540at 2428.513 kb on + strand, within BWI76_RS11540at 2428.513 kb on - strand, within BWI76_RS11540at 2428.521 kb on - strand, within BWI76_RS11540at 2428.543 kb on + strand, within BWI76_RS11540at 2428.551 kb on - strand, within BWI76_RS11540at 2428.551 kb on - strandat 2428.551 kb on - strand, within BWI76_RS11540at 2428.557 kb on + strand, within BWI76_RS11540at 2428.557 kb on + strand, within BWI76_RS11540at 2428.569 kb on + strand, within BWI76_RS11540at 2428.569 kb on + strand, within BWI76_RS11540at 2428.569 kb on + strand, within BWI76_RS11540at 2428.572 kb on + strand, within BWI76_RS11540at 2428.577 kb on - strand, within BWI76_RS11540

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH10
remove
2,425,646 - BWI76_RS11530 0.47 +0.0
2,425,753 + BWI76_RS11530 0.56 -0.2
2,425,924 + BWI76_RS11530 0.69 -0.1
2,426,128 - BWI76_RS11530 0.86 -0.6
2,426,467 + +0.7
2,427,190 - BWI76_RS11535 0.52 -0.4
2,427,342 + BWI76_RS11535 0.66 -0.8
2,427,510 + BWI76_RS11535 0.82 -1.3
2,427,579 - BWI76_RS11535 0.88 -0.7
2,427,617 + +0.5
2,427,951 - BWI76_RS11540 0.16 +0.3
2,428,061 + BWI76_RS11540 0.24 +0.1
2,428,177 + BWI76_RS11540 0.32 -0.4
2,428,207 + BWI76_RS11540 0.34 +0.1
2,428,228 - BWI76_RS11540 0.36 -0.1
2,428,240 + BWI76_RS11540 0.37 -0.3
2,428,240 + BWI76_RS11540 0.37 -0.1
2,428,240 + BWI76_RS11540 0.37 -0.4
2,428,248 - BWI76_RS11540 0.37 +0.8
2,428,248 - BWI76_RS11540 0.37 -0.7
2,428,276 + BWI76_RS11540 0.39 +0.1
2,428,276 - BWI76_RS11540 0.39 -0.2
2,428,308 + +1.0
2,428,374 - BWI76_RS11540 0.46 +0.1
2,428,407 + BWI76_RS11540 0.49 +1.5
2,428,413 - BWI76_RS11540 0.49 +0.2
2,428,471 + BWI76_RS11540 0.53 -0.6
2,428,490 + BWI76_RS11540 0.55 +1.4
2,428,490 + BWI76_RS11540 0.55 -1.0
2,428,503 - BWI76_RS11540 0.56 +2.6
2,428,505 + BWI76_RS11540 0.56 +1.5
2,428,513 + BWI76_RS11540 0.56 +0.9
2,428,513 + BWI76_RS11540 0.56 -0.9
2,428,513 - BWI76_RS11540 0.56 -1.5
2,428,521 - BWI76_RS11540 0.57 +0.7
2,428,543 + BWI76_RS11540 0.59 -0.1
2,428,551 - BWI76_RS11540 0.59 +0.3
2,428,551 - +0.4
2,428,551 - BWI76_RS11540 0.59 +0.6
2,428,557 + BWI76_RS11540 0.60 -1.0
2,428,557 + BWI76_RS11540 0.60 -0.3
2,428,569 + BWI76_RS11540 0.60 +1.0
2,428,569 + BWI76_RS11540 0.60 -1.7
2,428,569 + BWI76_RS11540 0.60 +0.1
2,428,572 + BWI76_RS11540 0.61 -0.8
2,428,577 - BWI76_RS11540 0.61 +1.6

Or see this region's nucleotide sequence