Experiment: Pyruvate-Sulfate (60-15mM) with Chromate 50uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt atoC and DVUA0058 are separated by 40 nucleotides DVUA0058 and DVUA0059 are separated by 44 nucleotides
DVUA0057: atoC - sigma-54 dependent transcriptional regulator/response regulator (TIGR), at 68,687 to 70,117
atoC
DVUA0058: DVUA0058 - BNR/Asp-box repeat protein (TIGR), at 70,158 to 72,893
DVUA0058
DVUA0059: DVUA0059 - conserved hypothetical protein (TIGR), at 72,938 to 74,314
DVUA0059
Position (kb) 70
71
72
73 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 69.221 kb on + strand, within atoC at 69.231 kb on - strand, within atoC at 69.231 kb on - strand, within atoC at 69.231 kb on - strand, within atoC at 69.353 kb on + strand, within atoC at 69.368 kb on - strand, within atoC at 69.415 kb on - strand, within atoC at 69.424 kb on - strand, within atoC at 69.432 kb on - strand, within atoC at 69.443 kb on + strand, within atoC at 69.448 kb on + strand, within atoC at 69.448 kb on + strand, within atoC at 69.451 kb on - strand, within atoC at 69.489 kb on - strand, within atoC at 69.514 kb on + strand, within atoC at 69.535 kb on - strand, within atoC at 69.649 kb on + strand, within atoC at 69.662 kb on + strand, within atoC at 69.681 kb on - strand, within atoC at 69.772 kb on - strand, within atoC at 69.851 kb on + strand, within atoC at 69.941 kb on - strand, within atoC at 69.955 kb on + strand, within atoC at 69.963 kb on - strand, within atoC at 70.006 kb on + strand at 70.026 kb on - strand at 70.104 kb on + strand at 70.104 kb on + strand at 70.157 kb on + strand at 70.393 kb on + strand at 70.401 kb on - strand at 70.482 kb on + strand, within DVUA0058 at 70.505 kb on - strand, within DVUA0058 at 70.550 kb on + strand, within DVUA0058 at 70.659 kb on + strand, within DVUA0058 at 70.668 kb on - strand, within DVUA0058 at 70.705 kb on - strand, within DVUA0058 at 70.719 kb on + strand, within DVUA0058 at 70.819 kb on - strand, within DVUA0058 at 70.968 kb on + strand, within DVUA0058 at 71.024 kb on + strand, within DVUA0058 at 71.034 kb on - strand, within DVUA0058 at 71.041 kb on + strand, within DVUA0058 at 71.049 kb on - strand, within DVUA0058 at 71.049 kb on - strand, within DVUA0058 at 71.052 kb on - strand, within DVUA0058 at 71.063 kb on + strand, within DVUA0058 at 71.168 kb on + strand, within DVUA0058 at 71.169 kb on - strand, within DVUA0058 at 71.176 kb on - strand, within DVUA0058 at 71.176 kb on - strand, within DVUA0058 at 71.176 kb on - strand, within DVUA0058 at 71.203 kb on - strand, within DVUA0058 at 71.212 kb on + strand, within DVUA0058 at 71.220 kb on - strand, within DVUA0058 at 71.322 kb on - strand, within DVUA0058 at 71.339 kb on - strand, within DVUA0058 at 71.339 kb on - strand, within DVUA0058 at 71.421 kb on - strand, within DVUA0058 at 71.445 kb on - strand, within DVUA0058 at 71.445 kb on - strand, within DVUA0058 at 71.512 kb on - strand, within DVUA0058 at 71.597 kb on - strand, within DVUA0058 at 71.637 kb on + strand, within DVUA0058 at 71.652 kb on - strand, within DVUA0058 at 71.672 kb on + strand, within DVUA0058 at 71.691 kb on - strand, within DVUA0058 at 71.798 kb on - strand, within DVUA0058 at 71.798 kb on - strand, within DVUA0058 at 71.829 kb on - strand, within DVUA0058 at 71.877 kb on + strand, within DVUA0058 at 71.927 kb on + strand, within DVUA0058 at 71.944 kb on + strand, within DVUA0058 at 71.964 kb on + strand, within DVUA0058 at 72.030 kb on + strand, within DVUA0058 at 72.036 kb on + strand, within DVUA0058 at 72.077 kb on - strand, within DVUA0058 at 72.101 kb on - strand, within DVUA0058 at 72.160 kb on - strand, within DVUA0058 at 72.214 kb on + strand, within DVUA0058 at 72.246 kb on + strand, within DVUA0058 at 72.253 kb on + strand, within DVUA0058 at 72.321 kb on - strand, within DVUA0058 at 72.335 kb on + strand, within DVUA0058 at 72.335 kb on + strand, within DVUA0058 at 72.357 kb on + strand, within DVUA0058 at 72.372 kb on + strand, within DVUA0058 at 72.447 kb on + strand, within DVUA0058 at 72.525 kb on + strand, within DVUA0058 at 72.533 kb on - strand, within DVUA0058 at 72.533 kb on - strand, within DVUA0058 at 72.533 kb on - strand, within DVUA0058 at 72.609 kb on + strand, within DVUA0058 at 72.655 kb on + strand at 72.655 kb on + strand at 72.704 kb on + strand at 72.761 kb on - strand at 72.777 kb on + strand at 72.909 kb on + strand at 72.912 kb on + strand at 72.917 kb on + strand at 73.020 kb on + strand at 73.022 kb on - strand at 73.042 kb on + strand at 73.050 kb on - strand at 73.050 kb on - strand at 73.236 kb on - strand, within DVUA0059 at 73.467 kb on + strand, within DVUA0059 at 73.510 kb on - strand, within DVUA0059 at 73.535 kb on + strand, within DVUA0059 at 73.548 kb on - strand, within DVUA0059 at 73.679 kb on + strand, within DVUA0059 at 73.680 kb on - strand, within DVUA0059 at 73.680 kb on - strand, within DVUA0059 at 73.689 kb on + strand, within DVUA0059 at 73.689 kb on + strand, within DVUA0059 at 73.692 kb on - strand, within DVUA0059 at 73.697 kb on - strand, within DVUA0059 at 73.697 kb on - strand, within DVUA0059 at 73.699 kb on + strand, within DVUA0059 at 73.851 kb on + strand, within DVUA0059 at 73.864 kb on - strand, within DVUA0059 at 73.891 kb on - strand, within DVUA0059
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Chromate 50uM remove 69,221 + atoC DVUA0057 0.37 +1.9 69,231 - atoC DVUA0057 0.38 -0.4 69,231 - atoC DVUA0057 0.38 +0.5 69,231 - atoC DVUA0057 0.38 -1.3 69,353 + atoC DVUA0057 0.47 +0.9 69,368 - atoC DVUA0057 0.48 -0.5 69,415 - atoC DVUA0057 0.51 +0.6 69,424 - atoC DVUA0057 0.52 +0.1 69,432 - atoC DVUA0057 0.52 -0.1 69,443 + atoC DVUA0057 0.53 +0.9 69,448 + atoC DVUA0057 0.53 -0.0 69,448 + atoC DVUA0057 0.53 +0.1 69,451 - atoC DVUA0057 0.53 +0.9 69,489 - atoC DVUA0057 0.56 -0.3 69,514 + atoC DVUA0057 0.58 -0.1 69,535 - atoC DVUA0057 0.59 +1.9 69,649 + atoC DVUA0057 0.67 +0.0 69,662 + atoC DVUA0057 0.68 +0.2 69,681 - atoC DVUA0057 0.69 +0.3 69,772 - atoC DVUA0057 0.76 -0.4 69,851 + atoC DVUA0057 0.81 -0.2 69,941 - atoC DVUA0057 0.88 -0.8 69,955 + atoC DVUA0057 0.89 +1.8 69,963 - atoC DVUA0057 0.89 -0.1 70,006 + -0.2 70,026 - +0.3 70,104 + -0.8 70,104 + +0.2 70,157 + -0.5 70,393 + -0.7 70,401 - +1.0 70,482 + DVUA0058 0.12 -0.4 70,505 - DVUA0058 0.13 -0.3 70,550 + DVUA0058 0.14 -0.1 70,659 + DVUA0058 0.18 -0.4 70,668 - DVUA0058 0.19 -4.4 70,705 - DVUA0058 0.20 -0.7 70,719 + DVUA0058 0.21 +0.5 70,819 - DVUA0058 0.24 -0.2 70,968 + DVUA0058 0.30 +0.3 71,024 + DVUA0058 0.32 +0.5 71,034 - DVUA0058 0.32 -0.3 71,041 + DVUA0058 0.32 +0.5 71,049 - DVUA0058 0.33 +0.2 71,049 - DVUA0058 0.33 -1.2 71,052 - DVUA0058 0.33 +0.3 71,063 + DVUA0058 0.33 -1.0 71,168 + DVUA0058 0.37 -0.6 71,169 - DVUA0058 0.37 +0.2 71,176 - DVUA0058 0.37 -0.8 71,176 - DVUA0058 0.37 -0.4 71,176 - DVUA0058 0.37 -1.4 71,203 - DVUA0058 0.38 -0.6 71,212 + DVUA0058 0.39 -0.1 71,220 - DVUA0058 0.39 -0.0 71,322 - DVUA0058 0.43 +0.5 71,339 - DVUA0058 0.43 -1.1 71,339 - DVUA0058 0.43 -1.0 71,421 - DVUA0058 0.46 -0.6 71,445 - DVUA0058 0.47 +0.0 71,445 - DVUA0058 0.47 -0.5 71,512 - DVUA0058 0.49 -1.1 71,597 - DVUA0058 0.53 -0.4 71,637 + DVUA0058 0.54 -1.0 71,652 - DVUA0058 0.55 -0.9 71,672 + DVUA0058 0.55 -0.1 71,691 - DVUA0058 0.56 -0.3 71,798 - DVUA0058 0.60 -0.9 71,798 - DVUA0058 0.60 -0.5 71,829 - DVUA0058 0.61 +1.9 71,877 + DVUA0058 0.63 -0.8 71,927 + DVUA0058 0.65 +0.2 71,944 + DVUA0058 0.65 +0.4 71,964 + DVUA0058 0.66 -1.6 72,030 + DVUA0058 0.68 -0.6 72,036 + DVUA0058 0.69 -0.6 72,077 - DVUA0058 0.70 +0.2 72,101 - DVUA0058 0.71 -0.2 72,160 - DVUA0058 0.73 +0.9 72,214 + DVUA0058 0.75 -0.3 72,246 + DVUA0058 0.76 +0.5 72,253 + DVUA0058 0.77 -0.0 72,321 - DVUA0058 0.79 +1.5 72,335 + DVUA0058 0.80 -0.1 72,335 + DVUA0058 0.80 +0.3 72,357 + DVUA0058 0.80 -0.5 72,372 + DVUA0058 0.81 -0.2 72,447 + DVUA0058 0.84 -1.7 72,525 + DVUA0058 0.87 -1.1 72,533 - DVUA0058 0.87 -0.4 72,533 - DVUA0058 0.87 +0.2 72,533 - DVUA0058 0.87 -3.5 72,609 + DVUA0058 0.90 +0.4 72,655 + -0.2 72,655 + +1.0 72,704 + +0.3 72,761 - +0.4 72,777 + -0.3 72,909 + -0.5 72,912 + -0.2 72,917 + +0.0 73,020 + -0.5 73,022 - +1.9 73,042 + -0.8 73,050 - -2.1 73,050 - -0.2 73,236 - DVUA0059 0.22 -0.2 73,467 + DVUA0059 0.38 -0.2 73,510 - DVUA0059 0.42 +0.4 73,535 + DVUA0059 0.43 -0.2 73,548 - DVUA0059 0.44 -0.4 73,679 + DVUA0059 0.54 +0.4 73,680 - DVUA0059 0.54 -0.0 73,680 - DVUA0059 0.54 -1.6 73,689 + DVUA0059 0.55 -0.4 73,689 + DVUA0059 0.55 -0.5 73,692 - DVUA0059 0.55 +0.2 73,697 - DVUA0059 0.55 -0.3 73,697 - DVUA0059 0.55 -0.5 73,699 + DVUA0059 0.55 -0.4 73,851 + DVUA0059 0.66 -0.2 73,864 - DVUA0059 0.67 -0.3 73,891 - DVUA0059 0.69 -0.6
Or see this region's nucleotide sequence