Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0170

Experiment: Pyruvate-Sulfate (60-15mM) with Chromate 50uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0169 and DVU0170 are separated by 432 nucleotidesDVU0170 and patB are separated by 228 nucleotides DVU0169: DVU0169 - oligopeptide/dipeptide ABC transporter, periplasmic oligopeptide/dipeptide-binding protein (TIGR), at 209,432 to 210,994 DVU0169 DVU0170: DVU0170 - methyl-accepting chemotaxis protein (TIGR), at 211,427 to 213,496 DVU0170 DVU0171: patB - hemolysin-related protein (TIGR), at 213,725 to 214,906 patB Position (kb) 211 212 213 214Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 210.468 kb on + strand, within DVU0169at 210.506 kb on - strand, within DVU0169at 210.506 kb on - strand, within DVU0169at 210.506 kb on - strand, within DVU0169at 210.506 kb on - strand, within DVU0169at 210.557 kb on - strand, within DVU0169at 210.559 kb on + strand, within DVU0169at 210.560 kb on - strand, within DVU0169at 210.564 kb on + strand, within DVU0169at 210.572 kb on - strand, within DVU0169at 210.605 kb on - strand, within DVU0169at 210.605 kb on - strand, within DVU0169at 210.684 kb on - strand, within DVU0169at 210.722 kb on - strand, within DVU0169at 210.722 kb on - strand, within DVU0169at 210.724 kb on + strand, within DVU0169at 210.732 kb on - strand, within DVU0169at 210.744 kb on + strand, within DVU0169at 210.744 kb on + strand, within DVU0169at 210.744 kb on + strand, within DVU0169at 210.749 kb on + strand, within DVU0169at 210.908 kb on + strandat 211.023 kb on - strandat 211.056 kb on - strandat 211.097 kb on - strandat 211.204 kb on - strandat 211.211 kb on + strandat 211.214 kb on - strandat 211.214 kb on - strandat 211.219 kb on - strandat 211.224 kb on - strandat 211.226 kb on - strandat 211.326 kb on + strandat 211.449 kb on + strandat 211.477 kb on - strandat 211.498 kb on - strandat 211.500 kb on - strandat 211.548 kb on + strandat 211.548 kb on + strandat 211.566 kb on - strandat 211.571 kb on - strandat 211.588 kb on + strandat 211.601 kb on + strandat 211.620 kb on - strandat 211.690 kb on - strand, within DVU0170at 211.738 kb on + strand, within DVU0170at 211.746 kb on + strand, within DVU0170at 211.803 kb on - strand, within DVU0170at 211.803 kb on - strand, within DVU0170at 211.882 kb on + strand, within DVU0170at 212.001 kb on - strand, within DVU0170at 212.060 kb on + strand, within DVU0170at 212.068 kb on - strand, within DVU0170at 212.091 kb on - strand, within DVU0170at 212.122 kb on + strand, within DVU0170at 212.122 kb on + strand, within DVU0170at 212.161 kb on - strand, within DVU0170at 212.161 kb on - strand, within DVU0170at 212.174 kb on + strand, within DVU0170at 212.197 kb on + strand, within DVU0170at 212.212 kb on - strand, within DVU0170at 212.247 kb on - strand, within DVU0170at 212.277 kb on + strand, within DVU0170at 212.277 kb on + strand, within DVU0170at 212.281 kb on + strand, within DVU0170at 212.327 kb on + strand, within DVU0170at 212.332 kb on + strand, within DVU0170at 212.449 kb on + strand, within DVU0170at 212.470 kb on + strand, within DVU0170at 212.483 kb on - strand, within DVU0170at 212.485 kb on + strand, within DVU0170at 212.492 kb on + strand, within DVU0170at 212.492 kb on + strand, within DVU0170at 212.492 kb on + strand, within DVU0170at 212.495 kb on + strand, within DVU0170at 212.498 kb on - strand, within DVU0170at 212.540 kb on - strand, within DVU0170at 212.561 kb on - strand, within DVU0170at 212.572 kb on - strand, within DVU0170at 212.654 kb on - strand, within DVU0170at 212.689 kb on + strand, within DVU0170at 212.713 kb on + strand, within DVU0170at 212.729 kb on + strand, within DVU0170at 212.730 kb on - strand, within DVU0170at 212.971 kb on + strand, within DVU0170at 212.973 kb on + strand, within DVU0170at 212.979 kb on - strand, within DVU0170at 212.981 kb on - strand, within DVU0170at 212.983 kb on + strand, within DVU0170at 213.011 kb on - strand, within DVU0170at 213.037 kb on + strand, within DVU0170at 213.045 kb on - strand, within DVU0170at 213.050 kb on + strand, within DVU0170at 213.051 kb on - strand, within DVU0170at 213.058 kb on - strand, within DVU0170at 213.058 kb on - strand, within DVU0170at 213.064 kb on - strand, within DVU0170at 213.089 kb on - strand, within DVU0170at 213.107 kb on + strand, within DVU0170at 213.204 kb on + strand, within DVU0170at 213.204 kb on + strand, within DVU0170at 213.204 kb on + strand, within DVU0170at 213.204 kb on + strand, within DVU0170at 213.204 kb on + strand, within DVU0170at 213.212 kb on - strand, within DVU0170at 213.254 kb on - strand, within DVU0170at 213.254 kb on - strand, within DVU0170at 213.254 kb on - strand, within DVU0170at 213.287 kb on + strand, within DVU0170at 213.297 kb on + strandat 213.316 kb on + strandat 213.333 kb on - strandat 213.363 kb on - strandat 213.373 kb on - strandat 213.508 kb on + strandat 213.508 kb on - strandat 213.514 kb on - strandat 213.516 kb on - strandat 213.555 kb on - strandat 213.577 kb on - strandat 213.605 kb on + strandat 213.623 kb on - strandat 213.654 kb on - strandat 213.715 kb on - strandat 213.735 kb on + strandat 213.774 kb on - strandat 213.795 kb on - strandat 213.805 kb on - strandat 213.893 kb on - strand, within patBat 213.919 kb on + strand, within patBat 213.949 kb on + strand, within patBat 214.002 kb on + strand, within patBat 214.126 kb on + strand, within patBat 214.163 kb on - strand, within patBat 214.168 kb on - strand, within patBat 214.195 kb on + strand, within patBat 214.238 kb on + strand, within patBat 214.275 kb on - strand, within patBat 214.379 kb on - strand, within patBat 214.410 kb on + strand, within patBat 214.413 kb on + strand, within patBat 214.446 kb on - strand, within patBat 214.447 kb on - strand, within patB

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Chromate 50uM
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210,468 + DVU0169 0.66 -0.7
210,506 - DVU0169 0.69 -0.1
210,506 - DVU0169 0.69 +0.1
210,506 - DVU0169 0.69 -0.8
210,506 - DVU0169 0.69 +0.3
210,557 - DVU0169 0.72 +0.8
210,559 + DVU0169 0.72 -0.3
210,560 - DVU0169 0.72 -0.1
210,564 + DVU0169 0.72 -0.8
210,572 - DVU0169 0.73 +0.4
210,605 - DVU0169 0.75 -0.5
210,605 - DVU0169 0.75 -1.2
210,684 - DVU0169 0.80 -1.0
210,722 - DVU0169 0.83 +0.0
210,722 - DVU0169 0.83 -1.1
210,724 + DVU0169 0.83 +0.2
210,732 - DVU0169 0.83 -0.1
210,744 + DVU0169 0.84 +0.8
210,744 + DVU0169 0.84 -1.3
210,744 + DVU0169 0.84 -0.4
210,749 + DVU0169 0.84 -2.2
210,908 + -0.3
211,023 - -0.7
211,056 - +0.8
211,097 - +2.8
211,204 - -0.4
211,211 + +0.1
211,214 - -0.6
211,214 - -0.1
211,219 - -1.0
211,224 - -0.5
211,226 - -1.8
211,326 + +0.1
211,449 + +1.4
211,477 - -0.6
211,498 - -0.8
211,500 - -1.3
211,548 + +0.0
211,548 + +0.5
211,566 - -0.1
211,571 - -0.2
211,588 + +0.3
211,601 + +0.0
211,620 - -0.4
211,690 - DVU0170 0.13 -0.5
211,738 + DVU0170 0.15 -0.4
211,746 + DVU0170 0.15 -0.4
211,803 - DVU0170 0.18 -0.3
211,803 - DVU0170 0.18 -2.3
211,882 + DVU0170 0.22 -2.1
212,001 - DVU0170 0.28 -0.6
212,060 + DVU0170 0.31 -0.2
212,068 - DVU0170 0.31 -0.5
212,091 - DVU0170 0.32 -1.0
212,122 + DVU0170 0.34 -0.8
212,122 + DVU0170 0.34 -0.6
212,161 - DVU0170 0.35 -1.0
212,161 - DVU0170 0.35 -0.1
212,174 + DVU0170 0.36 +1.6
212,197 + DVU0170 0.37 -1.7
212,212 - DVU0170 0.38 +2.0
212,247 - DVU0170 0.40 -0.9
212,277 + DVU0170 0.41 -0.4
212,277 + DVU0170 0.41 -0.7
212,281 + DVU0170 0.41 -1.2
212,327 + DVU0170 0.43 -1.2
212,332 + DVU0170 0.44 -0.1
212,449 + DVU0170 0.49 -2.1
212,470 + DVU0170 0.50 +0.6
212,483 - DVU0170 0.51 -1.2
212,485 + DVU0170 0.51 -0.3
212,492 + DVU0170 0.51 -0.1
212,492 + DVU0170 0.51 -0.5
212,492 + DVU0170 0.51 +0.1
212,495 + DVU0170 0.52 -0.6
212,498 - DVU0170 0.52 -0.3
212,540 - DVU0170 0.54 -0.9
212,561 - DVU0170 0.55 -0.1
212,572 - DVU0170 0.55 -0.2
212,654 - DVU0170 0.59 +0.4
212,689 + DVU0170 0.61 +0.0
212,713 + DVU0170 0.62 -2.8
212,729 + DVU0170 0.63 -0.7
212,730 - DVU0170 0.63 -0.3
212,971 + DVU0170 0.75 -0.2
212,973 + DVU0170 0.75 -0.1
212,979 - DVU0170 0.75 -2.0
212,981 - DVU0170 0.75 -0.6
212,983 + DVU0170 0.75 +0.4
213,011 - DVU0170 0.77 -0.4
213,037 + DVU0170 0.78 -3.0
213,045 - DVU0170 0.78 +0.0
213,050 + DVU0170 0.78 -0.1
213,051 - DVU0170 0.78 -0.7
213,058 - DVU0170 0.79 +0.0
213,058 - DVU0170 0.79 +0.3
213,064 - DVU0170 0.79 -0.5
213,089 - DVU0170 0.80 -0.4
213,107 + DVU0170 0.81 -0.9
213,204 + DVU0170 0.86 -0.0
213,204 + DVU0170 0.86 -0.6
213,204 + DVU0170 0.86 +0.4
213,204 + DVU0170 0.86 -1.0
213,204 + DVU0170 0.86 -0.0
213,212 - DVU0170 0.86 -2.1
213,254 - DVU0170 0.88 -0.3
213,254 - DVU0170 0.88 +0.9
213,254 - DVU0170 0.88 -0.6
213,287 + DVU0170 0.90 -0.3
213,297 + +1.0
213,316 + +0.1
213,333 - -0.5
213,363 - -0.2
213,373 - -0.1
213,508 + -0.1
213,508 - -1.1
213,514 - -0.3
213,516 - +0.0
213,555 - -0.3
213,577 - +1.1
213,605 + +0.5
213,623 - -0.1
213,654 - -0.2
213,715 - +0.0
213,735 + +0.3
213,774 - +0.4
213,795 - -0.8
213,805 - +1.8
213,893 - patB DVU0171 0.14 -0.5
213,919 + patB DVU0171 0.16 -0.2
213,949 + patB DVU0171 0.19 -3.8
214,002 + patB DVU0171 0.23 -0.7
214,126 + patB DVU0171 0.34 -0.3
214,163 - patB DVU0171 0.37 -0.2
214,168 - patB DVU0171 0.37 +1.6
214,195 + patB DVU0171 0.40 -0.2
214,238 + patB DVU0171 0.43 -0.8
214,275 - patB DVU0171 0.47 +0.4
214,379 - patB DVU0171 0.55 -0.6
214,410 + patB DVU0171 0.58 -0.6
214,413 + patB DVU0171 0.58 -4.5
214,446 - patB DVU0171 0.61 +1.0
214,447 - patB DVU0171 0.61 -0.0

Or see this region's nucleotide sequence