Experiment: SMN_rich
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0775 and Rru_A0776 overlap by 4 nucleotides Rru_A0776 and Rru_A0777 overlap by 4 nucleotides
Rru_A0775: Rru_A0775 - 2OG-Fe(II) oxygenase (NCBI), at 926,495 to 927,526
_A0775
Rru_A0776: Rru_A0776 - Aspartate/tyrosine/aromatic aminotransferase (NCBI), at 927,523 to 928,698
_A0776
Rru_A0777: Rru_A0777 - D-lactate dehydrogenase (cytochrome) (NCBI), at 928,695 to 930,143
_A0777
Position (kb) 927
928
929 Strain fitness (log2 ratio) -1
0
1 at 926.621 kb on + strand, within Rru_A0775 at 926.622 kb on - strand, within Rru_A0775 at 926.622 kb on - strand, within Rru_A0775 at 926.750 kb on + strand, within Rru_A0775 at 926.750 kb on + strand, within Rru_A0775 at 926.752 kb on + strand, within Rru_A0775 at 926.753 kb on - strand, within Rru_A0775 at 926.753 kb on - strand, within Rru_A0775 at 926.753 kb on - strand, within Rru_A0775 at 927.018 kb on - strand, within Rru_A0775 at 927.018 kb on - strand, within Rru_A0775 at 927.251 kb on + strand, within Rru_A0775 at 927.251 kb on + strand, within Rru_A0775 at 927.251 kb on + strand, within Rru_A0775 at 927.895 kb on + strand, within Rru_A0776 at 927.896 kb on - strand, within Rru_A0776 at 928.126 kb on + strand, within Rru_A0776 at 928.471 kb on + strand, within Rru_A0776 at 928.472 kb on - strand, within Rru_A0776 at 928.472 kb on - strand, within Rru_A0776 at 929.526 kb on - strand, within Rru_A0777
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich remove 926,621 + Rru_A0775 0.12 +0.0 926,622 - Rru_A0775 0.12 +0.7 926,622 - Rru_A0775 0.12 +0.3 926,750 + Rru_A0775 0.25 -0.7 926,750 + Rru_A0775 0.25 -0.3 926,752 + Rru_A0775 0.25 -0.9 926,753 - Rru_A0775 0.25 -0.4 926,753 - Rru_A0775 0.25 -0.3 926,753 - Rru_A0775 0.25 +1.4 927,018 - Rru_A0775 0.51 -0.0 927,018 - Rru_A0775 0.51 +0.4 927,251 + Rru_A0775 0.73 +0.4 927,251 + Rru_A0775 0.73 -1.2 927,251 + Rru_A0775 0.73 +0.2 927,895 + Rru_A0776 0.32 +0.1 927,896 - Rru_A0776 0.32 +0.3 928,126 + Rru_A0776 0.51 -1.1 928,471 + Rru_A0776 0.81 -0.9 928,472 - Rru_A0776 0.81 -0.9 928,472 - Rru_A0776 0.81 -0.2 929,526 - Rru_A0777 0.57 -0.1
Or see this region's nucleotide sequence