Experiment: SMN_rich
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0202 and Rru_A0203 are separated by 239 nucleotides Rru_A0203 and Rru_A0204 are separated by 249 nucleotides Rru_A0204 and Rru_A0205 are separated by 188 nucleotides
Rru_A0202: Rru_A0202 - Phospholipase D/Transphosphatidylase (NCBI), at 250,648 to 253,059
_A0202
Rru_A0203: Rru_A0203 - hypothetical protein (NCBI), at 253,299 to 253,607
_A0203
Rru_A0204: Rru_A0204 - BolA-like protein (NCBI), at 253,857 to 254,201
_A0204
Rru_A0205: Rru_A0205 - Heat shock protein DnaJ-like (NCBI), at 254,390 to 255,001
_A0205
Position (kb) 253
254 Strain fitness (log2 ratio) -2
-1
0
1 at 252.729 kb on + strand, within Rru_A0202 at 252.729 kb on + strand, within Rru_A0202 at 252.729 kb on + strand, within Rru_A0202 at 252.729 kb on + strand, within Rru_A0202 at 252.730 kb on - strand, within Rru_A0202 at 252.730 kb on - strand, within Rru_A0202 at 252.920 kb on + strand at 252.920 kb on + strand at 252.921 kb on - strand at 252.921 kb on - strand at 252.921 kb on - strand at 253.118 kb on + strand at 253.118 kb on + strand at 253.518 kb on + strand, within Rru_A0203 at 253.598 kb on + strand at 253.598 kb on + strand at 253.669 kb on - strand at 253.704 kb on - strand at 253.726 kb on + strand at 253.726 kb on + strand at 254.363 kb on + strand at 254.364 kb on - strand at 254.364 kb on - strand at 254.366 kb on + strand at 254.366 kb on + strand at 254.366 kb on + strand at 254.367 kb on - strand at 254.367 kb on - strand at 254.367 kb on - strand at 254.367 kb on - strand at 254.546 kb on + strand, within Rru_A0205 at 254.547 kb on - strand, within Rru_A0205 at 254.547 kb on - strand, within Rru_A0205 at 254.547 kb on - strand, within Rru_A0205 at 254.549 kb on + strand, within Rru_A0205 at 254.549 kb on + strand, within Rru_A0205 at 254.549 kb on + strand, within Rru_A0205 at 254.550 kb on - strand, within Rru_A0205 at 254.550 kb on - strand, within Rru_A0205 at 254.579 kb on + strand, within Rru_A0205 at 254.579 kb on + strand, within Rru_A0205 at 254.580 kb on - strand, within Rru_A0205 at 254.580 kb on - strand, within Rru_A0205 at 254.580 kb on - strand, within Rru_A0205 at 254.580 kb on - strand, within Rru_A0205 at 254.580 kb on - strand, within Rru_A0205 at 254.582 kb on - strand, within Rru_A0205 at 254.582 kb on - strand, within Rru_A0205 at 254.597 kb on + strand, within Rru_A0205 at 254.598 kb on - strand, within Rru_A0205 at 254.598 kb on - strand, within Rru_A0205 at 254.601 kb on - strand, within Rru_A0205
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich remove 252,729 + Rru_A0202 0.86 -0.5 252,729 + Rru_A0202 0.86 +1.4 252,729 + Rru_A0202 0.86 -0.4 252,729 + Rru_A0202 0.86 -0.2 252,730 - Rru_A0202 0.86 +0.0 252,730 - Rru_A0202 0.86 -0.5 252,920 + +0.1 252,920 + -1.7 252,921 - +0.3 252,921 - +0.8 252,921 - -0.4 253,118 + -1.0 253,118 + +0.1 253,518 + Rru_A0203 0.71 -0.6 253,598 + -0.6 253,598 + +1.0 253,669 - -0.9 253,704 - +0.1 253,726 + +0.7 253,726 + +0.7 254,363 + +1.4 254,364 - -1.5 254,364 - +1.4 254,366 + +0.1 254,366 + -2.2 254,366 + -0.3 254,367 - +0.2 254,367 - -0.8 254,367 - +1.4 254,367 - +0.1 254,546 + Rru_A0205 0.25 -0.4 254,547 - Rru_A0205 0.26 -0.3 254,547 - Rru_A0205 0.26 +0.2 254,547 - Rru_A0205 0.26 +0.0 254,549 + Rru_A0205 0.26 -0.4 254,549 + Rru_A0205 0.26 -0.1 254,549 + Rru_A0205 0.26 -0.1 254,550 - Rru_A0205 0.26 -0.2 254,550 - Rru_A0205 0.26 -0.3 254,579 + Rru_A0205 0.31 +0.9 254,579 + Rru_A0205 0.31 -0.2 254,580 - Rru_A0205 0.31 -0.4 254,580 - Rru_A0205 0.31 -0.2 254,580 - Rru_A0205 0.31 +0.3 254,580 - Rru_A0205 0.31 +0.4 254,580 - Rru_A0205 0.31 +0.5 254,582 - Rru_A0205 0.31 -0.5 254,582 - Rru_A0205 0.31 +0.1 254,597 + Rru_A0205 0.34 +0.1 254,598 - Rru_A0205 0.34 -0.0 254,598 - Rru_A0205 0.34 +1.4 254,601 - Rru_A0205 0.34 -0.1
Or see this region's nucleotide sequence