Experiment: SMN_rich
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0123 and Rru_A0124 are separated by 296 nucleotides Rru_A0124 and Rru_A0125 overlap by 4 nucleotides
Rru_A0123: Rru_A0123 - RfaE-HldE bifunctional protein, D-beta-D-heptose 7-phosphate kinase, D-beta-D-heptose 1-phosphate adenosyltransferase (NCBI), at 142,472 to 143,962
_A0123
Rru_A0124: Rru_A0124 - Putative diguanylate phosphodiesterase (EAL domain) (NCBI), at 144,259 to 145,608
_A0124
Rru_A0125: Rru_A0125 - diguanylate phosphodiesterase (EAL domain) (NCBI), at 145,605 to 146,954
_A0125
Position (kb) 144
145
146 Strain fitness (log2 ratio) -1
0
1 at 144.002 kb on + strand at 144.002 kb on + strand at 144.002 kb on + strand at 144.002 kb on + strand at 144.003 kb on - strand at 144.003 kb on - strand at 144.003 kb on - strand at 144.025 kb on - strand at 144.025 kb on - strand at 144.137 kb on - strand at 144.184 kb on - strand at 144.206 kb on - strand at 144.460 kb on + strand, within Rru_A0124 at 144.460 kb on + strand, within Rru_A0124 at 144.461 kb on - strand, within Rru_A0124 at 144.765 kb on + strand, within Rru_A0124 at 145.431 kb on + strand, within Rru_A0124 at 145.431 kb on + strand, within Rru_A0124 at 145.431 kb on + strand, within Rru_A0124 at 145.431 kb on + strand, within Rru_A0124 at 145.432 kb on - strand, within Rru_A0124 at 145.432 kb on - strand, within Rru_A0124 at 145.432 kb on - strand, within Rru_A0124 at 145.566 kb on + strand at 145.566 kb on + strand at 145.566 kb on + strand at 145.566 kb on + strand at 145.566 kb on + strand at 145.778 kb on - strand, within Rru_A0125 at 146.439 kb on + strand, within Rru_A0125 at 146.440 kb on - strand, within Rru_A0125 at 146.602 kb on - strand, within Rru_A0125 at 146.602 kb on - strand, within Rru_A0125
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich remove 144,002 + -0.4 144,002 + -0.1 144,002 + +1.0 144,002 + -0.9 144,003 - -0.2 144,003 - -0.8 144,003 - -0.1 144,025 - -0.9 144,025 - +0.6 144,137 - +0.6 144,184 - -0.5 144,206 - -0.9 144,460 + Rru_A0124 0.15 +0.3 144,460 + Rru_A0124 0.15 +0.9 144,461 - Rru_A0124 0.15 +0.9 144,765 + Rru_A0124 0.37 -0.1 145,431 + Rru_A0124 0.87 -0.4 145,431 + Rru_A0124 0.87 -0.6 145,431 + Rru_A0124 0.87 -1.0 145,431 + Rru_A0124 0.87 +0.4 145,432 - Rru_A0124 0.87 -0.0 145,432 - Rru_A0124 0.87 +0.2 145,432 - Rru_A0124 0.87 +0.3 145,566 + +0.3 145,566 + -0.4 145,566 + +0.6 145,566 + -0.0 145,566 + -0.3 145,778 - Rru_A0125 0.13 +0.4 146,439 + Rru_A0125 0.62 -0.3 146,440 - Rru_A0125 0.62 +0.6 146,602 - Rru_A0125 0.74 +0.3 146,602 - Rru_A0125 0.74 -0.8
Or see this region's nucleotide sequence