Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07575

Experiment: H2 N-free with 10mM L-Carnitine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07570 and MMP_RS07575 are separated by 15 nucleotidesMMP_RS07575 and MMP_RS07580 are separated by 55 nucleotidesMMP_RS07580 and MMP_RS07585 are separated by 39 nucleotides MMP_RS07570: MMP_RS07570 - nucleotidyltransferase family protein, at 1,431,231 to 1,432,280 _RS07570 MMP_RS07575: MMP_RS07575 - RNA ligase partner protein, at 1,432,296 to 1,432,967 _RS07575 MMP_RS07580: MMP_RS07580 - DUF356 domain-containing protein, at 1,433,023 to 1,433,403 _RS07580 MMP_RS07585: MMP_RS07585 - isoleucine--tRNA ligase, at 1,433,443 to 1,436,547 _RS07585 Position (kb) 1432 1433Strain fitness (log2 ratio) -3 -2 -1 0 1at 1431.503 kb on - strand, within MMP_RS07570at 1431.683 kb on + strand, within MMP_RS07570at 1431.729 kb on + strand, within MMP_RS07570at 1431.729 kb on + strand, within MMP_RS07570at 1431.731 kb on - strand, within MMP_RS07570at 1431.731 kb on - strand, within MMP_RS07570at 1431.786 kb on - strand, within MMP_RS07570at 1431.787 kb on + strand, within MMP_RS07570at 1431.787 kb on + strand, within MMP_RS07570at 1431.807 kb on - strand, within MMP_RS07570at 1431.807 kb on - strand, within MMP_RS07570at 1431.932 kb on - strand, within MMP_RS07570at 1431.942 kb on + strand, within MMP_RS07570at 1432.034 kb on - strand, within MMP_RS07570at 1432.035 kb on + strand, within MMP_RS07570at 1432.062 kb on - strand, within MMP_RS07570at 1432.077 kb on + strand, within MMP_RS07570at 1432.108 kb on + strand, within MMP_RS07570at 1432.134 kb on - strand, within MMP_RS07570at 1432.212 kb on + strandat 1432.222 kb on + strandat 1432.322 kb on - strandat 1432.323 kb on + strandat 1432.585 kb on - strand, within MMP_RS07575at 1432.585 kb on - strand, within MMP_RS07575at 1432.599 kb on + strand, within MMP_RS07575at 1432.678 kb on + strand, within MMP_RS07575at 1432.984 kb on + strandat 1433.098 kb on + strand, within MMP_RS07580at 1433.103 kb on + strand, within MMP_RS07580at 1433.109 kb on + strand, within MMP_RS07580at 1433.309 kb on + strand, within MMP_RS07580at 1433.354 kb on + strand, within MMP_RS07580at 1433.412 kb on + strandat 1433.799 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Carnitine
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1,431,503 - MMP_RS07570 0.26 -0.1
1,431,683 + MMP_RS07570 0.43 -1.5
1,431,729 + MMP_RS07570 0.47 +0.4
1,431,729 + MMP_RS07570 0.47 -1.0
1,431,731 - MMP_RS07570 0.48 +0.3
1,431,731 - MMP_RS07570 0.48 +1.1
1,431,786 - MMP_RS07570 0.53 -1.1
1,431,787 + MMP_RS07570 0.53 +0.7
1,431,787 + MMP_RS07570 0.53 +0.8
1,431,807 - MMP_RS07570 0.55 -0.2
1,431,807 - MMP_RS07570 0.55 -0.0
1,431,932 - MMP_RS07570 0.67 +0.2
1,431,942 + MMP_RS07570 0.68 +0.6
1,432,034 - MMP_RS07570 0.76 +0.1
1,432,035 + MMP_RS07570 0.77 -1.0
1,432,062 - MMP_RS07570 0.79 -0.3
1,432,077 + MMP_RS07570 0.81 -0.2
1,432,108 + MMP_RS07570 0.84 -0.0
1,432,134 - MMP_RS07570 0.86 +0.9
1,432,212 + +0.8
1,432,222 + +0.7
1,432,322 - -1.8
1,432,323 + -2.3
1,432,585 - MMP_RS07575 0.43 -2.8
1,432,585 - MMP_RS07575 0.43 -0.5
1,432,599 + MMP_RS07575 0.45 -2.0
1,432,678 + MMP_RS07575 0.57 -1.5
1,432,984 + -2.2
1,433,098 + MMP_RS07580 0.20 -1.1
1,433,103 + MMP_RS07580 0.21 -1.7
1,433,109 + MMP_RS07580 0.23 -1.4
1,433,309 + MMP_RS07580 0.75 -0.5
1,433,354 + MMP_RS07580 0.87 -0.3
1,433,412 + -1.4
1,433,799 - -1.5

Or see this region's nucleotide sequence