Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04455

Experiment: H2 N-free with 10mM L-Carnitine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04440 and MMP_RS04445 are separated by 42 nucleotidesMMP_RS04445 and MMP_RS04450 are separated by 9 nucleotidesMMP_RS04450 and MMP_RS04455 are separated by 49 nucleotidesMMP_RS04455 and MMP_RS04460 overlap by 8 nucleotides MMP_RS04440: MMP_RS04440 - nitrogenase iron protein, at 844,090 to 844,917 _RS04440 MMP_RS04445: MMP_RS04445 - P-II family nitrogen regulator, at 844,960 to 845,277 _RS04445 MMP_RS04450: MMP_RS04450 - P-II family nitrogen regulator, at 845,287 to 845,652 _RS04450 MMP_RS04455: MMP_RS04455 - nitrogenase subunit alpha, at 845,702 to 847,135 _RS04455 MMP_RS04460: MMP_RS04460 - nitrogenase molybdenum-iron protein subunit beta, at 847,128 to 848,516 _RS04460 Position (kb) 845 846 847 848Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 844.808 kb on + strand, within MMP_RS04440at 844.880 kb on - strandat 844.889 kb on - strandat 844.910 kb on - strandat 844.911 kb on + strandat 844.919 kb on - strandat 844.930 kb on + strandat 844.930 kb on + strandat 844.933 kb on - strandat 844.934 kb on + strandat 845.009 kb on - strand, within MMP_RS04445at 845.086 kb on + strand, within MMP_RS04445at 845.086 kb on + strand, within MMP_RS04445at 845.105 kb on + strand, within MMP_RS04445at 845.139 kb on + strand, within MMP_RS04445at 845.165 kb on - strand, within MMP_RS04445at 845.191 kb on - strand, within MMP_RS04445at 845.191 kb on - strand, within MMP_RS04445at 845.214 kb on - strand, within MMP_RS04445at 845.245 kb on - strand, within MMP_RS04445at 845.273 kb on - strandat 845.276 kb on + strandat 845.284 kb on - strandat 845.284 kb on - strandat 845.287 kb on + strandat 845.453 kb on - strand, within MMP_RS04450at 845.476 kb on - strand, within MMP_RS04450at 845.476 kb on - strand, within MMP_RS04450at 845.476 kb on - strand, within MMP_RS04450at 845.476 kb on - strand, within MMP_RS04450at 845.476 kb on - strand, within MMP_RS04450at 845.477 kb on + strand, within MMP_RS04450at 845.501 kb on - strand, within MMP_RS04450at 845.502 kb on + strand, within MMP_RS04450at 845.502 kb on + strand, within MMP_RS04450at 845.502 kb on + strand, within MMP_RS04450at 845.531 kb on - strand, within MMP_RS04450at 845.531 kb on - strand, within MMP_RS04450at 845.545 kb on + strand, within MMP_RS04450at 845.552 kb on - strand, within MMP_RS04450at 845.553 kb on + strand, within MMP_RS04450at 845.557 kb on + strand, within MMP_RS04450at 845.592 kb on + strand, within MMP_RS04450at 845.759 kb on - strandat 845.760 kb on + strandat 845.807 kb on + strandat 845.807 kb on + strandat 845.807 kb on + strandat 845.830 kb on - strandat 845.830 kb on - strandat 845.831 kb on + strandat 845.886 kb on - strand, within MMP_RS04455at 845.895 kb on - strand, within MMP_RS04455at 845.895 kb on - strand, within MMP_RS04455at 845.896 kb on + strand, within MMP_RS04455at 845.896 kb on + strand, within MMP_RS04455at 845.905 kb on + strand, within MMP_RS04455at 845.907 kb on - strand, within MMP_RS04455at 845.926 kb on - strand, within MMP_RS04455at 845.927 kb on + strand, within MMP_RS04455at 845.992 kb on + strand, within MMP_RS04455at 846.040 kb on + strand, within MMP_RS04455at 846.040 kb on + strand, within MMP_RS04455at 846.131 kb on - strand, within MMP_RS04455at 846.131 kb on - strand, within MMP_RS04455at 846.132 kb on + strand, within MMP_RS04455at 846.148 kb on - strand, within MMP_RS04455at 846.188 kb on + strand, within MMP_RS04455at 846.284 kb on - strand, within MMP_RS04455at 846.362 kb on - strand, within MMP_RS04455at 846.362 kb on - strand, within MMP_RS04455at 846.362 kb on - strand, within MMP_RS04455at 846.363 kb on + strand, within MMP_RS04455at 846.363 kb on + strand, within MMP_RS04455at 846.365 kb on + strand, within MMP_RS04455at 846.365 kb on + strand, within MMP_RS04455at 846.365 kb on + strand, within MMP_RS04455at 846.365 kb on + strand, within MMP_RS04455at 846.380 kb on - strand, within MMP_RS04455at 846.399 kb on + strand, within MMP_RS04455at 846.409 kb on - strand, within MMP_RS04455at 846.487 kb on + strand, within MMP_RS04455at 846.496 kb on + strand, within MMP_RS04455at 846.518 kb on - strand, within MMP_RS04455at 846.519 kb on + strand, within MMP_RS04455at 846.519 kb on + strand, within MMP_RS04455at 846.522 kb on - strand, within MMP_RS04455at 846.617 kb on + strand, within MMP_RS04455at 846.695 kb on - strand, within MMP_RS04455at 846.715 kb on - strand, within MMP_RS04455at 846.779 kb on - strand, within MMP_RS04455at 846.783 kb on - strand, within MMP_RS04455at 846.784 kb on + strand, within MMP_RS04455at 846.795 kb on - strand, within MMP_RS04455at 846.795 kb on - strand, within MMP_RS04455at 846.796 kb on + strand, within MMP_RS04455at 846.796 kb on + strand, within MMP_RS04455at 846.796 kb on + strand, within MMP_RS04455at 846.796 kb on + strand, within MMP_RS04455at 846.798 kb on - strand, within MMP_RS04455at 846.975 kb on - strand, within MMP_RS04455at 846.996 kb on - strandat 846.997 kb on + strandat 847.057 kb on - strandat 847.057 kb on - strandat 847.058 kb on + strandat 847.059 kb on - strandat 847.060 kb on + strandat 847.062 kb on + strandat 847.073 kb on - strandat 847.073 kb on - strandat 847.125 kb on - strandat 847.138 kb on - strandat 847.198 kb on - strandat 847.244 kb on + strandat 847.244 kb on + strandat 847.302 kb on + strand, within MMP_RS04460at 847.394 kb on + strand, within MMP_RS04460at 847.550 kb on - strand, within MMP_RS04460at 847.551 kb on + strand, within MMP_RS04460at 847.676 kb on + strand, within MMP_RS04460at 847.706 kb on - strand, within MMP_RS04460at 847.706 kb on - strand, within MMP_RS04460at 847.733 kb on - strand, within MMP_RS04460at 847.733 kb on - strand, within MMP_RS04460at 847.738 kb on - strand, within MMP_RS04460at 847.739 kb on + strand, within MMP_RS04460at 847.739 kb on + strand, within MMP_RS04460at 847.743 kb on + strand, within MMP_RS04460at 847.748 kb on - strand, within MMP_RS04460at 847.804 kb on + strand, within MMP_RS04460at 847.806 kb on - strand, within MMP_RS04460at 847.862 kb on - strand, within MMP_RS04460at 847.877 kb on - strand, within MMP_RS04460at 847.878 kb on + strand, within MMP_RS04460at 847.878 kb on + strand, within MMP_RS04460at 847.878 kb on + strand, within MMP_RS04460at 847.878 kb on + strand, within MMP_RS04460at 847.881 kb on - strand, within MMP_RS04460at 847.882 kb on + strand, within MMP_RS04460at 847.917 kb on - strand, within MMP_RS04460at 848.039 kb on - strand, within MMP_RS04460at 848.040 kb on + strand, within MMP_RS04460at 848.076 kb on - strand, within MMP_RS04460at 848.076 kb on - strand, within MMP_RS04460at 848.080 kb on - strand, within MMP_RS04460at 848.081 kb on + strand, within MMP_RS04460at 848.081 kb on + strand, within MMP_RS04460at 848.103 kb on - strand, within MMP_RS04460at 848.119 kb on - strand, within MMP_RS04460at 848.120 kb on + strand, within MMP_RS04460

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Carnitine
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844,808 + MMP_RS04440 0.87 -3.4
844,880 - -4.5
844,889 - -4.1
844,910 - -4.6
844,911 + -3.8
844,919 - -3.9
844,930 + -3.8
844,930 + -4.6
844,933 - -5.6
844,934 + -5.9
845,009 - MMP_RS04445 0.15 -4.7
845,086 + MMP_RS04445 0.40 -4.2
845,086 + MMP_RS04445 0.40 -5.6
845,105 + MMP_RS04445 0.46 -3.9
845,139 + MMP_RS04445 0.56 -4.9
845,165 - MMP_RS04445 0.64 -3.1
845,191 - MMP_RS04445 0.73 -4.0
845,191 - MMP_RS04445 0.73 -5.2
845,214 - MMP_RS04445 0.80 -4.0
845,245 - MMP_RS04445 0.90 -4.4
845,273 - -4.3
845,276 + -4.3
845,284 - -4.0
845,284 - -3.0
845,287 + -3.2
845,453 - MMP_RS04450 0.45 -2.8
845,476 - MMP_RS04450 0.52 -4.8
845,476 - MMP_RS04450 0.52 -3.7
845,476 - MMP_RS04450 0.52 -4.0
845,476 - MMP_RS04450 0.52 -3.1
845,476 - MMP_RS04450 0.52 -4.0
845,477 + MMP_RS04450 0.52 -4.0
845,501 - MMP_RS04450 0.58 -4.4
845,502 + MMP_RS04450 0.59 -3.2
845,502 + MMP_RS04450 0.59 -6.3
845,502 + MMP_RS04450 0.59 -4.5
845,531 - MMP_RS04450 0.67 -4.3
845,531 - MMP_RS04450 0.67 -4.0
845,545 + MMP_RS04450 0.70 -5.4
845,552 - MMP_RS04450 0.72 -4.2
845,553 + MMP_RS04450 0.73 -4.1
845,557 + MMP_RS04450 0.74 -3.8
845,592 + MMP_RS04450 0.83 -5.0
845,759 - -3.1
845,760 + -3.9
845,807 + -4.3
845,807 + -4.4
845,807 + -2.9
845,830 - -3.4
845,830 - -4.5
845,831 + -4.0
845,886 - MMP_RS04455 0.13 -5.2
845,895 - MMP_RS04455 0.13 -4.4
845,895 - MMP_RS04455 0.13 -5.3
845,896 + MMP_RS04455 0.14 -4.1
845,896 + MMP_RS04455 0.14 -3.5
845,905 + MMP_RS04455 0.14 -5.1
845,907 - MMP_RS04455 0.14 -4.8
845,926 - MMP_RS04455 0.16 -3.9
845,927 + MMP_RS04455 0.16 -3.5
845,992 + MMP_RS04455 0.20 -4.1
846,040 + MMP_RS04455 0.24 -3.6
846,040 + MMP_RS04455 0.24 -4.3
846,131 - MMP_RS04455 0.30 -4.5
846,131 - MMP_RS04455 0.30 -4.2
846,132 + MMP_RS04455 0.30 -3.5
846,148 - MMP_RS04455 0.31 -2.6
846,188 + MMP_RS04455 0.34 -3.9
846,284 - MMP_RS04455 0.41 -4.2
846,362 - MMP_RS04455 0.46 -3.8
846,362 - MMP_RS04455 0.46 -3.3
846,362 - MMP_RS04455 0.46 -3.7
846,363 + MMP_RS04455 0.46 -4.2
846,363 + MMP_RS04455 0.46 -4.2
846,365 + MMP_RS04455 0.46 -3.9
846,365 + MMP_RS04455 0.46 -3.7
846,365 + MMP_RS04455 0.46 -2.9
846,365 + MMP_RS04455 0.46 -4.1
846,380 - MMP_RS04455 0.47 -3.7
846,399 + MMP_RS04455 0.49 -5.3
846,409 - MMP_RS04455 0.49 -3.5
846,487 + MMP_RS04455 0.55 -4.8
846,496 + MMP_RS04455 0.55 -4.3
846,518 - MMP_RS04455 0.57 -4.4
846,519 + MMP_RS04455 0.57 -4.3
846,519 + MMP_RS04455 0.57 -4.2
846,522 - MMP_RS04455 0.57 -4.1
846,617 + MMP_RS04455 0.64 -4.2
846,695 - MMP_RS04455 0.69 -3.7
846,715 - MMP_RS04455 0.71 -4.0
846,779 - MMP_RS04455 0.75 -3.4
846,783 - MMP_RS04455 0.75 -5.3
846,784 + MMP_RS04455 0.75 -4.6
846,795 - MMP_RS04455 0.76 -2.8
846,795 - MMP_RS04455 0.76 -3.1
846,796 + MMP_RS04455 0.76 -3.6
846,796 + MMP_RS04455 0.76 -4.3
846,796 + MMP_RS04455 0.76 -4.0
846,796 + MMP_RS04455 0.76 -2.7
846,798 - MMP_RS04455 0.76 -4.1
846,975 - MMP_RS04455 0.89 -2.7
846,996 - -3.6
846,997 + -4.8
847,057 - -3.3
847,057 - -3.8
847,058 + -4.4
847,059 - -4.4
847,060 + -6.6
847,062 + -3.6
847,073 - -3.5
847,073 - -4.0
847,125 - -3.8
847,138 - -4.2
847,198 - -4.5
847,244 + -2.9
847,244 + -3.8
847,302 + MMP_RS04460 0.13 -5.0
847,394 + MMP_RS04460 0.19 -3.3
847,550 - MMP_RS04460 0.30 -3.6
847,551 + MMP_RS04460 0.30 -4.0
847,676 + MMP_RS04460 0.39 -3.8
847,706 - MMP_RS04460 0.42 -3.9
847,706 - MMP_RS04460 0.42 -3.5
847,733 - MMP_RS04460 0.44 -4.4
847,733 - MMP_RS04460 0.44 -3.5
847,738 - MMP_RS04460 0.44 -3.1
847,739 + MMP_RS04460 0.44 -3.9
847,739 + MMP_RS04460 0.44 -3.5
847,743 + MMP_RS04460 0.44 -5.0
847,748 - MMP_RS04460 0.45 -3.6
847,804 + MMP_RS04460 0.49 -3.5
847,806 - MMP_RS04460 0.49 -3.7
847,862 - MMP_RS04460 0.53 -4.0
847,877 - MMP_RS04460 0.54 -4.8
847,878 + MMP_RS04460 0.54 -4.3
847,878 + MMP_RS04460 0.54 -3.6
847,878 + MMP_RS04460 0.54 -4.3
847,878 + MMP_RS04460 0.54 -3.6
847,881 - MMP_RS04460 0.54 -3.6
847,882 + MMP_RS04460 0.54 -4.2
847,917 - MMP_RS04460 0.57 -3.7
848,039 - MMP_RS04460 0.66 -4.2
848,040 + MMP_RS04460 0.66 -4.2
848,076 - MMP_RS04460 0.68 -4.2
848,076 - MMP_RS04460 0.68 -2.9
848,080 - MMP_RS04460 0.69 -3.8
848,081 + MMP_RS04460 0.69 -4.6
848,081 + MMP_RS04460 0.69 -3.6
848,103 - MMP_RS04460 0.70 -3.5
848,119 - MMP_RS04460 0.71 -4.5
848,120 + MMP_RS04460 0.71 -4.4

Or see this region's nucleotide sequence