Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04445

Experiment: H2 N-free with 10mM L-Carnitine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04440 and MMP_RS04445 are separated by 42 nucleotidesMMP_RS04445 and MMP_RS04450 are separated by 9 nucleotidesMMP_RS04450 and MMP_RS04455 are separated by 49 nucleotides MMP_RS04440: MMP_RS04440 - nitrogenase iron protein, at 844,090 to 844,917 _RS04440 MMP_RS04445: MMP_RS04445 - P-II family nitrogen regulator, at 844,960 to 845,277 _RS04445 MMP_RS04450: MMP_RS04450 - P-II family nitrogen regulator, at 845,287 to 845,652 _RS04450 MMP_RS04455: MMP_RS04455 - nitrogenase subunit alpha, at 845,702 to 847,135 _RS04455 Position (kb) 844 845 846Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 843.997 kb on - strandat 843.998 kb on + strandat 843.998 kb on + strandat 843.998 kb on + strandat 844.072 kb on - strandat 844.072 kb on - strandat 844.072 kb on - strandat 844.072 kb on - strandat 844.072 kb on - strandat 844.073 kb on + strandat 844.073 kb on + strandat 844.073 kb on + strandat 844.073 kb on + strandat 844.074 kb on - strandat 844.074 kb on - strandat 844.074 kb on - strandat 844.075 kb on + strandat 844.075 kb on + strandat 844.076 kb on - strandat 844.076 kb on - strandat 844.076 kb on - strandat 844.077 kb on + strandat 844.077 kb on + strandat 844.112 kb on + strandat 844.225 kb on + strand, within MMP_RS04440at 844.256 kb on - strand, within MMP_RS04440at 844.256 kb on - strand, within MMP_RS04440at 844.257 kb on + strand, within MMP_RS04440at 844.269 kb on - strand, within MMP_RS04440at 844.269 kb on - strand, within MMP_RS04440at 844.300 kb on + strand, within MMP_RS04440at 844.337 kb on - strand, within MMP_RS04440at 844.337 kb on - strand, within MMP_RS04440at 844.481 kb on - strand, within MMP_RS04440at 844.532 kb on + strand, within MMP_RS04440at 844.655 kb on - strand, within MMP_RS04440at 844.673 kb on - strand, within MMP_RS04440at 844.808 kb on + strand, within MMP_RS04440at 844.880 kb on - strandat 844.889 kb on - strandat 844.910 kb on - strandat 844.911 kb on + strandat 844.919 kb on - strandat 844.930 kb on + strandat 844.930 kb on + strandat 844.933 kb on - strandat 844.934 kb on + strandat 845.009 kb on - strand, within MMP_RS04445at 845.086 kb on + strand, within MMP_RS04445at 845.086 kb on + strand, within MMP_RS04445at 845.105 kb on + strand, within MMP_RS04445at 845.139 kb on + strand, within MMP_RS04445at 845.165 kb on - strand, within MMP_RS04445at 845.191 kb on - strand, within MMP_RS04445at 845.191 kb on - strand, within MMP_RS04445at 845.214 kb on - strand, within MMP_RS04445at 845.245 kb on - strand, within MMP_RS04445at 845.273 kb on - strandat 845.276 kb on + strandat 845.284 kb on - strandat 845.284 kb on - strandat 845.287 kb on + strandat 845.453 kb on - strand, within MMP_RS04450at 845.476 kb on - strand, within MMP_RS04450at 845.476 kb on - strand, within MMP_RS04450at 845.476 kb on - strand, within MMP_RS04450at 845.476 kb on - strand, within MMP_RS04450at 845.476 kb on - strand, within MMP_RS04450at 845.477 kb on + strand, within MMP_RS04450at 845.501 kb on - strand, within MMP_RS04450at 845.502 kb on + strand, within MMP_RS04450at 845.502 kb on + strand, within MMP_RS04450at 845.502 kb on + strand, within MMP_RS04450at 845.531 kb on - strand, within MMP_RS04450at 845.531 kb on - strand, within MMP_RS04450at 845.545 kb on + strand, within MMP_RS04450at 845.552 kb on - strand, within MMP_RS04450at 845.553 kb on + strand, within MMP_RS04450at 845.557 kb on + strand, within MMP_RS04450at 845.592 kb on + strand, within MMP_RS04450at 845.759 kb on - strandat 845.760 kb on + strandat 845.807 kb on + strandat 845.807 kb on + strandat 845.807 kb on + strandat 845.830 kb on - strandat 845.830 kb on - strandat 845.831 kb on + strandat 845.886 kb on - strand, within MMP_RS04455at 845.895 kb on - strand, within MMP_RS04455at 845.895 kb on - strand, within MMP_RS04455at 845.896 kb on + strand, within MMP_RS04455at 845.896 kb on + strand, within MMP_RS04455at 845.905 kb on + strand, within MMP_RS04455at 845.907 kb on - strand, within MMP_RS04455at 845.926 kb on - strand, within MMP_RS04455at 845.927 kb on + strand, within MMP_RS04455at 845.992 kb on + strand, within MMP_RS04455at 846.040 kb on + strand, within MMP_RS04455at 846.040 kb on + strand, within MMP_RS04455at 846.131 kb on - strand, within MMP_RS04455at 846.131 kb on - strand, within MMP_RS04455at 846.132 kb on + strand, within MMP_RS04455at 846.148 kb on - strand, within MMP_RS04455at 846.188 kb on + strand, within MMP_RS04455

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Carnitine
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843,997 - -5.6
843,998 + -2.9
843,998 + -3.2
843,998 + -3.9
844,072 - -3.6
844,072 - -5.1
844,072 - -4.5
844,072 - -4.4
844,072 - -4.6
844,073 + -5.2
844,073 + -4.3
844,073 + -7.1
844,073 + -3.4
844,074 - -5.6
844,074 - -3.7
844,074 - -5.1
844,075 + -4.3
844,075 + -3.3
844,076 - -3.9
844,076 - -4.5
844,076 - -2.6
844,077 + -4.3
844,077 + -4.3
844,112 + -4.0
844,225 + MMP_RS04440 0.16 -3.3
844,256 - MMP_RS04440 0.20 -3.7
844,256 - MMP_RS04440 0.20 -3.7
844,257 + MMP_RS04440 0.20 -5.5
844,269 - MMP_RS04440 0.22 -3.9
844,269 - MMP_RS04440 0.22 -3.2
844,300 + MMP_RS04440 0.25 -4.9
844,337 - MMP_RS04440 0.30 -3.4
844,337 - MMP_RS04440 0.30 -3.5
844,481 - MMP_RS04440 0.47 -3.8
844,532 + MMP_RS04440 0.53 -5.4
844,655 - MMP_RS04440 0.68 -3.7
844,673 - MMP_RS04440 0.70 -3.5
844,808 + MMP_RS04440 0.87 -3.4
844,880 - -4.5
844,889 - -4.1
844,910 - -4.6
844,911 + -3.8
844,919 - -3.9
844,930 + -3.8
844,930 + -4.6
844,933 - -5.6
844,934 + -5.9
845,009 - MMP_RS04445 0.15 -4.7
845,086 + MMP_RS04445 0.40 -4.2
845,086 + MMP_RS04445 0.40 -5.6
845,105 + MMP_RS04445 0.46 -3.9
845,139 + MMP_RS04445 0.56 -4.9
845,165 - MMP_RS04445 0.64 -3.1
845,191 - MMP_RS04445 0.73 -4.0
845,191 - MMP_RS04445 0.73 -5.2
845,214 - MMP_RS04445 0.80 -4.0
845,245 - MMP_RS04445 0.90 -4.4
845,273 - -4.3
845,276 + -4.3
845,284 - -4.0
845,284 - -3.0
845,287 + -3.2
845,453 - MMP_RS04450 0.45 -2.8
845,476 - MMP_RS04450 0.52 -4.8
845,476 - MMP_RS04450 0.52 -3.7
845,476 - MMP_RS04450 0.52 -4.0
845,476 - MMP_RS04450 0.52 -3.1
845,476 - MMP_RS04450 0.52 -4.0
845,477 + MMP_RS04450 0.52 -4.0
845,501 - MMP_RS04450 0.58 -4.4
845,502 + MMP_RS04450 0.59 -3.2
845,502 + MMP_RS04450 0.59 -6.3
845,502 + MMP_RS04450 0.59 -4.5
845,531 - MMP_RS04450 0.67 -4.3
845,531 - MMP_RS04450 0.67 -4.0
845,545 + MMP_RS04450 0.70 -5.4
845,552 - MMP_RS04450 0.72 -4.2
845,553 + MMP_RS04450 0.73 -4.1
845,557 + MMP_RS04450 0.74 -3.8
845,592 + MMP_RS04450 0.83 -5.0
845,759 - -3.1
845,760 + -3.9
845,807 + -4.3
845,807 + -4.4
845,807 + -2.9
845,830 - -3.4
845,830 - -4.5
845,831 + -4.0
845,886 - MMP_RS04455 0.13 -5.2
845,895 - MMP_RS04455 0.13 -4.4
845,895 - MMP_RS04455 0.13 -5.3
845,896 + MMP_RS04455 0.14 -4.1
845,896 + MMP_RS04455 0.14 -3.5
845,905 + MMP_RS04455 0.14 -5.1
845,907 - MMP_RS04455 0.14 -4.8
845,926 - MMP_RS04455 0.16 -3.9
845,927 + MMP_RS04455 0.16 -3.5
845,992 + MMP_RS04455 0.20 -4.1
846,040 + MMP_RS04455 0.24 -3.6
846,040 + MMP_RS04455 0.24 -4.3
846,131 - MMP_RS04455 0.30 -4.5
846,131 - MMP_RS04455 0.30 -4.2
846,132 + MMP_RS04455 0.30 -3.5
846,148 - MMP_RS04455 0.31 -2.6
846,188 + MMP_RS04455 0.34 -3.9

Or see this region's nucleotide sequence