Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p42g49 and HP15_p42g50 overlap by 4 nucleotides HP15_p42g50 and HP15_p42g51 are separated by 188 nucleotides HP15_p42g51 and HP15_p42g52 are separated by 25 nucleotides
HP15_p42g49: HP15_p42g49 - type IV secretion/conjugal transfer ATPase, VirB4 family, at 38,068 to 40,608
_p42g49
HP15_p42g50: HP15_p42g50 - conjugal transfer protein TrbD-like protein, at 40,605 to 40,730
_p42g50
HP15_p42g51: HP15_p42g51 - prepilin, at 40,919 to 41,344
_p42g51
HP15_p42g52: HP15_p42g52 - type II secretion system protein E, at 41,370 to 42,329
_p42g52
Position (kb) 40
41
42 Strain fitness (log2 ratio) -1
0
1 at 39.941 kb on - strand, within HP15_p42g49 at 40.127 kb on + strand, within HP15_p42g49 at 40.137 kb on + strand, within HP15_p42g49 at 40.144 kb on + strand, within HP15_p42g49 at 40.149 kb on + strand, within HP15_p42g49 at 40.160 kb on + strand, within HP15_p42g49 at 40.160 kb on + strand, within HP15_p42g49 at 40.162 kb on + strand, within HP15_p42g49 at 40.162 kb on - strand, within HP15_p42g49 at 40.168 kb on - strand, within HP15_p42g49 at 40.168 kb on - strand, within HP15_p42g49 at 40.170 kb on - strand, within HP15_p42g49 at 40.178 kb on - strand, within HP15_p42g49 at 40.222 kb on + strand, within HP15_p42g49 at 40.276 kb on + strand, within HP15_p42g49 at 40.283 kb on + strand, within HP15_p42g49 at 40.316 kb on - strand, within HP15_p42g49 at 40.318 kb on + strand, within HP15_p42g49 at 40.365 kb on - strand at 40.388 kb on + strand at 40.407 kb on + strand at 40.431 kb on + strand at 40.431 kb on + strand at 40.439 kb on - strand at 40.439 kb on - strand at 40.439 kb on - strand at 40.444 kb on + strand at 40.694 kb on + strand, within HP15_p42g50 at 40.717 kb on - strand, within HP15_p42g50 at 40.717 kb on - strand, within HP15_p42g50 at 40.717 kb on - strand, within HP15_p42g50 at 40.753 kb on + strand at 40.763 kb on + strand at 40.763 kb on + strand at 40.778 kb on + strand at 40.778 kb on + strand at 40.786 kb on - strand at 40.786 kb on - strand at 40.826 kb on + strand at 40.826 kb on + strand at 40.828 kb on + strand at 40.836 kb on + strand at 40.893 kb on + strand at 40.893 kb on - strand at 40.924 kb on - strand at 40.959 kb on + strand at 40.967 kb on - strand, within HP15_p42g51 at 40.980 kb on - strand, within HP15_p42g51 at 41.021 kb on + strand, within HP15_p42g51 at 41.055 kb on + strand, within HP15_p42g51 at 41.099 kb on + strand, within HP15_p42g51 at 41.114 kb on + strand, within HP15_p42g51 at 41.163 kb on - strand, within HP15_p42g51 at 41.164 kb on + strand, within HP15_p42g51 at 41.164 kb on + strand, within HP15_p42g51 at 41.164 kb on + strand, within HP15_p42g51 at 41.164 kb on + strand, within HP15_p42g51 at 41.169 kb on + strand, within HP15_p42g51 at 41.172 kb on - strand, within HP15_p42g51 at 41.172 kb on - strand, within HP15_p42g51 at 41.215 kb on + strand, within HP15_p42g51 at 41.223 kb on - strand, within HP15_p42g51 at 41.249 kb on + strand, within HP15_p42g51 at 41.249 kb on - strand, within HP15_p42g51 at 41.259 kb on - strand, within HP15_p42g51 at 41.265 kb on + strand, within HP15_p42g51 at 41.287 kb on + strand, within HP15_p42g51 at 41.287 kb on + strand, within HP15_p42g51 at 41.287 kb on + strand, within HP15_p42g51 at 41.292 kb on + strand, within HP15_p42g51 at 41.292 kb on + strand, within HP15_p42g51 at 41.295 kb on - strand, within HP15_p42g51 at 41.295 kb on - strand, within HP15_p42g51 at 41.295 kb on - strand, within HP15_p42g51 at 41.295 kb on - strand, within HP15_p42g51 at 41.295 kb on - strand, within HP15_p42g51 at 41.295 kb on - strand, within HP15_p42g51 at 41.295 kb on - strand, within HP15_p42g51 at 41.295 kb on - strand, within HP15_p42g51 at 41.310 kb on + strand at 41.319 kb on - strand at 41.334 kb on - strand at 41.388 kb on + strand at 41.388 kb on + strand at 41.396 kb on - strand at 41.396 kb on - strand at 41.422 kb on - strand at 41.464 kb on + strand at 41.469 kb on + strand, within HP15_p42g52 at 41.547 kb on + strand, within HP15_p42g52 at 41.547 kb on + strand, within HP15_p42g52 at 41.552 kb on + strand, within HP15_p42g52 at 41.557 kb on + strand, within HP15_p42g52 at 41.625 kb on + strand, within HP15_p42g52 at 41.625 kb on + strand, within HP15_p42g52 at 41.625 kb on + strand, within HP15_p42g52 at 41.660 kb on + strand, within HP15_p42g52 at 41.660 kb on + strand, within HP15_p42g52 at 41.660 kb on + strand, within HP15_p42g52 at 41.660 kb on + strand, within HP15_p42g52 at 41.671 kb on + strand, within HP15_p42g52 at 41.714 kb on + strand, within HP15_p42g52 at 41.714 kb on + strand, within HP15_p42g52 at 41.714 kb on + strand, within HP15_p42g52 at 41.714 kb on + strand, within HP15_p42g52 at 41.714 kb on + strand, within HP15_p42g52 at 41.725 kb on + strand, within HP15_p42g52 at 41.830 kb on + strand, within HP15_p42g52 at 41.830 kb on + strand, within HP15_p42g52 at 41.844 kb on + strand, within HP15_p42g52 at 41.844 kb on + strand, within HP15_p42g52 at 41.850 kb on + strand, within HP15_p42g52 at 41.894 kb on - strand, within HP15_p42g52 at 41.907 kb on - strand, within HP15_p42g52 at 41.954 kb on + strand, within HP15_p42g52 at 42.008 kb on + strand, within HP15_p42g52 at 42.021 kb on + strand, within HP15_p42g52 at 42.084 kb on + strand, within HP15_p42g52 at 42.087 kb on - strand, within HP15_p42g52 at 42.127 kb on - strand, within HP15_p42g52 at 42.132 kb on + strand, within HP15_p42g52 at 42.140 kb on - strand, within HP15_p42g52 at 42.142 kb on + strand, within HP15_p42g52 at 42.142 kb on + strand, within HP15_p42g52 at 42.142 kb on + strand, within HP15_p42g52 at 42.142 kb on + strand, within HP15_p42g52 at 42.142 kb on + strand, within HP15_p42g52 at 42.142 kb on + strand, within HP15_p42g52 at 42.142 kb on + strand, within HP15_p42g52 at 42.150 kb on - strand, within HP15_p42g52 at 42.150 kb on - strand, within HP15_p42g52 at 42.150 kb on - strand, within HP15_p42g52 at 42.150 kb on - strand, within HP15_p42g52 at 42.151 kb on - strand, within HP15_p42g52 at 42.151 kb on - strand, within HP15_p42g52 at 42.151 kb on - strand, within HP15_p42g52 at 42.154 kb on + strand, within HP15_p42g52 at 42.160 kb on - strand, within HP15_p42g52 at 42.168 kb on + strand, within HP15_p42g52 at 42.177 kb on - strand, within HP15_p42g52 at 42.187 kb on + strand, within HP15_p42g52 at 42.212 kb on + strand, within HP15_p42g52 at 42.226 kb on + strand, within HP15_p42g52 at 42.226 kb on + strand at 42.226 kb on + strand, within HP15_p42g52 at 42.226 kb on + strand, within HP15_p42g52 at 42.226 kb on + strand, within HP15_p42g52 at 42.234 kb on - strand at 42.234 kb on - strand at 42.294 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 39,941 - HP15_p42g49 0.74 -0.1 40,127 + HP15_p42g49 0.81 -0.0 40,137 + HP15_p42g49 0.81 -0.0 40,144 + HP15_p42g49 0.82 +0.3 40,149 + HP15_p42g49 0.82 -0.0 40,160 + HP15_p42g49 0.82 -0.1 40,160 + HP15_p42g49 0.82 +0.0 40,162 + HP15_p42g49 0.82 +0.2 40,162 - HP15_p42g49 0.82 -0.3 40,168 - HP15_p42g49 0.83 +0.0 40,168 - HP15_p42g49 0.83 -0.3 40,170 - HP15_p42g49 0.83 +0.8 40,178 - HP15_p42g49 0.83 -0.0 40,222 + HP15_p42g49 0.85 +0.1 40,276 + HP15_p42g49 0.87 -0.8 40,283 + HP15_p42g49 0.87 -0.3 40,316 - HP15_p42g49 0.88 -0.4 40,318 + HP15_p42g49 0.89 -0.2 40,365 - +0.5 40,388 + +1.0 40,407 + -0.2 40,431 + +0.4 40,431 + +0.3 40,439 - -0.0 40,439 - -0.4 40,439 - +0.3 40,444 + +0.1 40,694 + HP15_p42g50 0.71 +0.2 40,717 - HP15_p42g50 0.89 -0.0 40,717 - HP15_p42g50 0.89 -0.4 40,717 - HP15_p42g50 0.89 +0.2 40,753 + +0.4 40,763 + -0.3 40,763 + -0.1 40,778 + +0.2 40,778 + -0.1 40,786 - -0.0 40,786 - +0.2 40,826 + +0.0 40,826 + -0.3 40,828 + +0.1 40,836 + -0.4 40,893 + +0.4 40,893 - -0.1 40,924 - +0.7 40,959 + +0.4 40,967 - HP15_p42g51 0.11 +0.6 40,980 - HP15_p42g51 0.14 +0.7 41,021 + HP15_p42g51 0.24 +0.4 41,055 + HP15_p42g51 0.32 +0.1 41,099 + HP15_p42g51 0.42 +1.0 41,114 + HP15_p42g51 0.46 -0.1 41,163 - HP15_p42g51 0.57 -0.2 41,164 + HP15_p42g51 0.58 -0.3 41,164 + HP15_p42g51 0.58 -0.2 41,164 + HP15_p42g51 0.58 +1.0 41,164 + HP15_p42g51 0.58 +0.4 41,169 + HP15_p42g51 0.59 +0.5 41,172 - HP15_p42g51 0.59 +0.3 41,172 - HP15_p42g51 0.59 +0.3 41,215 + HP15_p42g51 0.69 -0.4 41,223 - HP15_p42g51 0.71 -0.0 41,249 + HP15_p42g51 0.77 -0.4 41,249 - HP15_p42g51 0.77 -0.8 41,259 - HP15_p42g51 0.80 +0.3 41,265 + HP15_p42g51 0.81 +0.0 41,287 + HP15_p42g51 0.86 +0.5 41,287 + HP15_p42g51 0.86 +0.1 41,287 + HP15_p42g51 0.86 +0.1 41,292 + HP15_p42g51 0.88 +0.3 41,292 + HP15_p42g51 0.88 +1.2 41,295 - HP15_p42g51 0.88 -0.4 41,295 - HP15_p42g51 0.88 +0.1 41,295 - HP15_p42g51 0.88 +0.2 41,295 - HP15_p42g51 0.88 +0.2 41,295 - HP15_p42g51 0.88 +0.2 41,295 - HP15_p42g51 0.88 +0.1 41,295 - HP15_p42g51 0.88 +0.4 41,295 - HP15_p42g51 0.88 +0.0 41,310 + +0.3 41,319 - +0.3 41,334 - -0.1 41,388 + -0.5 41,388 + +0.6 41,396 - +0.6 41,396 - +0.1 41,422 - -0.5 41,464 + +0.1 41,469 + HP15_p42g52 0.10 -0.5 41,547 + HP15_p42g52 0.18 +0.2 41,547 + HP15_p42g52 0.18 -0.6 41,552 + HP15_p42g52 0.19 -0.3 41,557 + HP15_p42g52 0.19 +0.4 41,625 + HP15_p42g52 0.27 +0.2 41,625 + HP15_p42g52 0.27 -0.1 41,625 + HP15_p42g52 0.27 -0.6 41,660 + HP15_p42g52 0.30 -0.5 41,660 + HP15_p42g52 0.30 +0.1 41,660 + HP15_p42g52 0.30 -0.2 41,660 + HP15_p42g52 0.30 +0.7 41,671 + HP15_p42g52 0.31 +0.5 41,714 + HP15_p42g52 0.36 -0.1 41,714 + HP15_p42g52 0.36 -0.2 41,714 + HP15_p42g52 0.36 -0.0 41,714 + HP15_p42g52 0.36 +0.2 41,714 + HP15_p42g52 0.36 +0.1 41,725 + HP15_p42g52 0.37 +0.3 41,830 + HP15_p42g52 0.48 -0.2 41,830 + HP15_p42g52 0.48 +0.1 41,844 + HP15_p42g52 0.49 +0.0 41,844 + HP15_p42g52 0.49 +0.2 41,850 + HP15_p42g52 0.50 -0.2 41,894 - HP15_p42g52 0.55 -0.4 41,907 - HP15_p42g52 0.56 +0.4 41,954 + HP15_p42g52 0.61 +0.5 42,008 + HP15_p42g52 0.66 -0.2 42,021 + HP15_p42g52 0.68 +0.1 42,084 + HP15_p42g52 0.74 +0.5 42,087 - HP15_p42g52 0.75 -0.1 42,127 - HP15_p42g52 0.79 +0.5 42,132 + HP15_p42g52 0.79 +0.2 42,140 - HP15_p42g52 0.80 +0.1 42,142 + HP15_p42g52 0.80 +0.1 42,142 + HP15_p42g52 0.80 +0.0 42,142 + HP15_p42g52 0.80 +0.3 42,142 + HP15_p42g52 0.80 +0.1 42,142 + HP15_p42g52 0.80 -0.1 42,142 + HP15_p42g52 0.80 +0.1 42,142 + HP15_p42g52 0.80 +0.1 42,150 - HP15_p42g52 0.81 +0.2 42,150 - HP15_p42g52 0.81 +0.0 42,150 - HP15_p42g52 0.81 +0.3 42,150 - HP15_p42g52 0.81 +0.2 42,151 - HP15_p42g52 0.81 +0.6 42,151 - HP15_p42g52 0.81 -0.4 42,151 - HP15_p42g52 0.81 +0.0 42,154 + HP15_p42g52 0.82 +0.4 42,160 - HP15_p42g52 0.82 +0.1 42,168 + HP15_p42g52 0.83 -0.1 42,177 - HP15_p42g52 0.84 -0.5 42,187 + HP15_p42g52 0.85 +0.3 42,212 + HP15_p42g52 0.88 +0.0 42,226 + HP15_p42g52 0.89 +0.3 42,226 + +1.2 42,226 + HP15_p42g52 0.89 +0.3 42,226 + HP15_p42g52 0.89 +0.4 42,226 + HP15_p42g52 0.89 +0.2 42,234 - -0.4 42,234 - +0.2 42,294 + -0.2
Or see this region's nucleotide sequence