Experiment: m.b. Cholin acetate 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00360 and PGA1_65p00370 are separated by 77 nucleotides PGA1_65p00370 and PGA1_65p00380 overlap by 4 nucleotides
PGA1_65p00360: PGA1_65p00360 - glycosyl transferase domain-containing protein, at 48,716 to 51,433
_65p00360
PGA1_65p00370: PGA1_65p00370 - putative glycosyl transferase, at 51,511 to 52,428
_65p00370
PGA1_65p00380: PGA1_65p00380 - hypothetical protein, at 52,425 to 53,744
_65p00380
Position (kb) 51
52
53 Strain fitness (log2 ratio) -2
-1
0
1
2 at 50.531 kb on + strand, within PGA1_65p00360 at 50.631 kb on - strand, within PGA1_65p00360 at 50.908 kb on + strand, within PGA1_65p00360 at 51.076 kb on + strand, within PGA1_65p00360 at 51.135 kb on - strand, within PGA1_65p00360 at 51.146 kb on + strand, within PGA1_65p00360 at 51.337 kb on + strand at 51.481 kb on + strand at 51.557 kb on - strand at 51.665 kb on - strand, within PGA1_65p00370 at 51.670 kb on - strand, within PGA1_65p00370 at 51.675 kb on - strand, within PGA1_65p00370 at 51.675 kb on - strand, within PGA1_65p00370 at 51.736 kb on + strand, within PGA1_65p00370 at 51.800 kb on - strand, within PGA1_65p00370 at 51.817 kb on + strand, within PGA1_65p00370 at 51.830 kb on + strand, within PGA1_65p00370 at 51.913 kb on - strand, within PGA1_65p00370 at 51.965 kb on - strand, within PGA1_65p00370 at 51.990 kb on - strand, within PGA1_65p00370 at 52.135 kb on - strand, within PGA1_65p00370 at 52.135 kb on - strand, within PGA1_65p00370 at 52.344 kb on - strand at 52.445 kb on - strand at 52.448 kb on - strand at 52.691 kb on - strand, within PGA1_65p00380 at 53.197 kb on - strand, within PGA1_65p00380 at 53.197 kb on - strand, within PGA1_65p00380 at 53.198 kb on - strand, within PGA1_65p00380 at 53.261 kb on + strand, within PGA1_65p00380
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 15 mM remove 50,531 + PGA1_65p00360 0.67 -1.0 50,631 - PGA1_65p00360 0.70 -0.1 50,908 + PGA1_65p00360 0.81 +1.4 51,076 + PGA1_65p00360 0.87 -1.6 51,135 - PGA1_65p00360 0.89 +0.6 51,146 + PGA1_65p00360 0.89 -0.1 51,337 + +2.0 51,481 + +0.5 51,557 - +0.9 51,665 - PGA1_65p00370 0.17 +0.8 51,670 - PGA1_65p00370 0.17 -0.2 51,675 - PGA1_65p00370 0.18 -0.5 51,675 - PGA1_65p00370 0.18 +1.3 51,736 + PGA1_65p00370 0.25 +1.4 51,800 - PGA1_65p00370 0.31 -0.1 51,817 + PGA1_65p00370 0.33 +0.6 51,830 + PGA1_65p00370 0.35 +1.4 51,913 - PGA1_65p00370 0.44 +0.9 51,965 - PGA1_65p00370 0.49 +1.5 51,990 - PGA1_65p00370 0.52 +0.9 52,135 - PGA1_65p00370 0.68 -0.6 52,135 - PGA1_65p00370 0.68 +1.4 52,344 - -2.4 52,445 - -0.6 52,448 - +0.1 52,691 - PGA1_65p00380 0.20 +0.7 53,197 - PGA1_65p00380 0.58 -0.1 53,197 - PGA1_65p00380 0.58 +0.9 53,198 - PGA1_65p00380 0.59 -1.1 53,261 + PGA1_65p00380 0.63 -0.0
Or see this region's nucleotide sequence