Experiment: m.b. Cholin acetate 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00240 and PGA1_65p00250 are separated by 3 nucleotides PGA1_65p00250 and PGA1_65p00260 are separated by 129 nucleotides PGA1_65p00260 and PGA1_65p00270 are separated by 68 nucleotides
PGA1_65p00240: PGA1_65p00240 - dTDP-glucose 4,6-dehydratase RffG, at 30,754 to 31,806
_65p00240
PGA1_65p00250: PGA1_65p00250 - dTDP-4-dehydrorhamnose 3,5-epimerase RfbC, at 31,810 to 32,445
_65p00250
PGA1_65p00260: PGA1_65p00260 - putative metallopeptidase, at 32,575 to 34,026
_65p00260
PGA1_65p00270: PGA1_65p00270 - Hemolysin-type calcium-binding repeat (2 copies)., at 34,095 to 36,314
_65p00270
Position (kb) 32
33
34
35 Strain fitness (log2 ratio) -1
0
1 at 31.652 kb on - strand, within PGA1_65p00240 at 31.698 kb on + strand, within PGA1_65p00240 at 31.969 kb on + strand, within PGA1_65p00250 at 32.372 kb on + strand, within PGA1_65p00250 at 32.380 kb on - strand, within PGA1_65p00250 at 32.393 kb on + strand at 32.456 kb on + strand at 32.464 kb on - strand at 32.469 kb on - strand at 32.537 kb on + strand at 32.574 kb on + strand at 32.632 kb on - strand at 32.805 kb on - strand, within PGA1_65p00260 at 32.851 kb on + strand, within PGA1_65p00260 at 32.859 kb on - strand, within PGA1_65p00260 at 33.046 kb on + strand, within PGA1_65p00260 at 33.051 kb on + strand, within PGA1_65p00260 at 33.082 kb on - strand, within PGA1_65p00260 at 33.104 kb on + strand, within PGA1_65p00260 at 33.112 kb on - strand, within PGA1_65p00260 at 33.154 kb on + strand, within PGA1_65p00260 at 33.177 kb on - strand, within PGA1_65p00260 at 33.182 kb on - strand, within PGA1_65p00260 at 33.320 kb on + strand, within PGA1_65p00260 at 33.518 kb on + strand, within PGA1_65p00260 at 33.526 kb on - strand, within PGA1_65p00260 at 33.553 kb on + strand, within PGA1_65p00260 at 33.604 kb on + strand, within PGA1_65p00260 at 33.645 kb on + strand, within PGA1_65p00260 at 33.999 kb on + strand at 34.052 kb on + strand at 34.697 kb on - strand, within PGA1_65p00270 at 34.969 kb on - strand, within PGA1_65p00270 at 35.002 kb on - strand, within PGA1_65p00270 at 35.002 kb on - strand, within PGA1_65p00270 at 35.004 kb on + strand, within PGA1_65p00270 at 35.004 kb on + strand, within PGA1_65p00270 at 35.004 kb on + strand, within PGA1_65p00270 at 35.004 kb on + strand, within PGA1_65p00270 at 35.012 kb on - strand, within PGA1_65p00270 at 35.012 kb on - strand, within PGA1_65p00270 at 35.012 kb on - strand, within PGA1_65p00270 at 35.012 kb on - strand, within PGA1_65p00270 at 35.012 kb on - strand, within PGA1_65p00270 at 35.012 kb on - strand, within PGA1_65p00270
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 15 mM remove 31,652 - PGA1_65p00240 0.85 -1.5 31,698 + PGA1_65p00240 0.90 -0.4 31,969 + PGA1_65p00250 0.25 +0.5 32,372 + PGA1_65p00250 0.88 +1.3 32,380 - PGA1_65p00250 0.90 -0.4 32,393 + +0.7 32,456 + -0.6 32,464 - +0.3 32,469 - -0.3 32,537 + -0.2 32,574 + +1.3 32,632 - +1.3 32,805 - PGA1_65p00260 0.16 +0.0 32,851 + PGA1_65p00260 0.19 +0.6 32,859 - PGA1_65p00260 0.20 +1.4 33,046 + PGA1_65p00260 0.32 -0.2 33,051 + PGA1_65p00260 0.33 +1.0 33,082 - PGA1_65p00260 0.35 +0.6 33,104 + PGA1_65p00260 0.36 +0.3 33,112 - PGA1_65p00260 0.37 +0.7 33,154 + PGA1_65p00260 0.40 +0.4 33,177 - PGA1_65p00260 0.41 +0.7 33,182 - PGA1_65p00260 0.42 -1.2 33,320 + PGA1_65p00260 0.51 +0.2 33,518 + PGA1_65p00260 0.65 +0.6 33,526 - PGA1_65p00260 0.65 +0.8 33,553 + PGA1_65p00260 0.67 +0.7 33,604 + PGA1_65p00260 0.71 +0.0 33,645 + PGA1_65p00260 0.74 -0.3 33,999 + +0.8 34,052 + -0.2 34,697 - PGA1_65p00270 0.27 +0.3 34,969 - PGA1_65p00270 0.39 +1.0 35,002 - PGA1_65p00270 0.41 -0.5 35,002 - PGA1_65p00270 0.41 +0.9 35,004 + PGA1_65p00270 0.41 +0.7 35,004 + PGA1_65p00270 0.41 +0.5 35,004 + PGA1_65p00270 0.41 +1.2 35,004 + PGA1_65p00270 0.41 +0.5 35,012 - PGA1_65p00270 0.41 +0.3 35,012 - PGA1_65p00270 0.41 +1.0 35,012 - PGA1_65p00270 0.41 +0.2 35,012 - PGA1_65p00270 0.41 -1.0 35,012 - PGA1_65p00270 0.41 +1.1 35,012 - PGA1_65p00270 0.41 -1.6
Or see this region's nucleotide sequence