Experiment: m.b. Cholin acetate 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00130 and PGA1_65p00140 are separated by 182 nucleotides PGA1_65p00140 and PGA1_65p00150 are separated by 181 nucleotides PGA1_65p00150 and PGA1_65p00160 overlap by 4 nucleotides
PGA1_65p00130: PGA1_65p00130 - putative amino-acid ABC transporter, ATP-binding protein, at 17,723 to 18,478
_65p00130
PGA1_65p00140: PGA1_65p00140 - hypothetical protein, at 18,661 to 18,867
_65p00140
PGA1_65p00150: PGA1_65p00150 - Protein of unknown function (DUF2886)., at 19,049 to 19,774
_65p00150
PGA1_65p00160: PGA1_65p00160 - Bacterial putative lipoprotein (DUF940)., at 19,771 to 21,903
_65p00160
Position (kb) 19
20 Strain fitness (log2 ratio) -1
0
1 at 18.064 kb on - strand, within PGA1_65p00130 at 18.319 kb on - strand, within PGA1_65p00130 at 18.421 kb on + strand at 18.632 kb on - strand at 18.720 kb on + strand, within PGA1_65p00140 at 18.835 kb on + strand, within PGA1_65p00140 at 18.879 kb on + strand at 18.901 kb on + strand at 18.901 kb on + strand at 18.904 kb on - strand at 19.018 kb on - strand at 19.218 kb on + strand, within PGA1_65p00150 at 19.303 kb on - strand, within PGA1_65p00150 at 19.369 kb on + strand, within PGA1_65p00150 at 19.369 kb on + strand, within PGA1_65p00150 at 19.377 kb on - strand, within PGA1_65p00150 at 19.407 kb on - strand at 19.559 kb on - strand, within PGA1_65p00150 at 19.570 kb on + strand, within PGA1_65p00150 at 19.609 kb on + strand, within PGA1_65p00150 at 19.620 kb on + strand, within PGA1_65p00150 at 19.638 kb on - strand, within PGA1_65p00150 at 19.811 kb on - strand at 19.962 kb on + strand at 19.970 kb on - strand at 20.114 kb on - strand, within PGA1_65p00160 at 20.306 kb on - strand, within PGA1_65p00160 at 20.372 kb on + strand, within PGA1_65p00160 at 20.515 kb on + strand, within PGA1_65p00160 at 20.576 kb on + strand, within PGA1_65p00160 at 20.682 kb on + strand, within PGA1_65p00160
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 15 mM remove 18,064 - PGA1_65p00130 0.45 +0.5 18,319 - PGA1_65p00130 0.79 +0.7 18,421 + +0.5 18,632 - +0.9 18,720 + PGA1_65p00140 0.29 -0.1 18,835 + PGA1_65p00140 0.84 +0.3 18,879 + +0.7 18,901 + +0.9 18,901 + +0.5 18,904 - +0.6 19,018 - -0.3 19,218 + PGA1_65p00150 0.23 +1.4 19,303 - PGA1_65p00150 0.35 +0.5 19,369 + PGA1_65p00150 0.44 +0.4 19,369 + PGA1_65p00150 0.44 +1.1 19,377 - PGA1_65p00150 0.45 +1.3 19,407 - +0.5 19,559 - PGA1_65p00150 0.70 -1.3 19,570 + PGA1_65p00150 0.72 -0.7 19,609 + PGA1_65p00150 0.77 +1.5 19,620 + PGA1_65p00150 0.79 +0.4 19,638 - PGA1_65p00150 0.81 +1.0 19,811 - +1.6 19,962 + +1.2 19,970 - -1.0 20,114 - PGA1_65p00160 0.16 -0.3 20,306 - PGA1_65p00160 0.25 +0.4 20,372 + PGA1_65p00160 0.28 +1.5 20,515 + PGA1_65p00160 0.35 +0.7 20,576 + PGA1_65p00160 0.38 -1.4 20,682 + PGA1_65p00160 0.43 -0.4
Or see this region's nucleotide sequence