Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_65p00070

Experiment: m.b. Cholin acetate 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_65p00060 and PGA1_65p00070 are separated by 951 nucleotidesPGA1_65p00070 and PGA1_65p00080 are separated by 117 nucleotides PGA1_65p00060: PGA1_65p00060 - putative regulatory protein, LuxR family, at 8,266 to 9,465 _65p00060 PGA1_65p00070: PGA1_65p00070 - putative regulatory protein, LuxR family, at 10,417 to 11,217 _65p00070 PGA1_65p00080: PGA1_65p00080 - putative glycosyl transferase, at 11,335 to 12,579 _65p00080 Position (kb) 10 11 12Strain fitness (log2 ratio) -1 0 1at 9.449 kb on + strandat 9.459 kb on + strandat 9.546 kb on - strandat 9.867 kb on + strandat 9.928 kb on + strandat 9.985 kb on - strandat 10.013 kb on - strandat 10.062 kb on - strandat 10.119 kb on + strandat 10.121 kb on + strandat 10.299 kb on - strandat 10.345 kb on + strandat 10.461 kb on - strandat 10.612 kb on - strand, within PGA1_65p00070at 10.613 kb on - strand, within PGA1_65p00070at 10.614 kb on + strand, within PGA1_65p00070at 10.691 kb on + strand, within PGA1_65p00070at 11.219 kb on - strandat 11.234 kb on - strandat 11.241 kb on + strandat 11.442 kb on - strandat 11.749 kb on - strand, within PGA1_65p00080at 11.785 kb on - strand, within PGA1_65p00080at 11.802 kb on + strand, within PGA1_65p00080at 11.869 kb on - strand, within PGA1_65p00080at 12.021 kb on + strand, within PGA1_65p00080at 12.053 kb on + strand, within PGA1_65p00080at 12.083 kb on - strand, within PGA1_65p00080at 12.139 kb on - strand, within PGA1_65p00080at 12.155 kb on + strand, within PGA1_65p00080

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 15 mM
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9,449 + -0.3
9,459 + +0.1
9,546 - +0.1
9,867 + -0.3
9,928 + -0.4
9,985 - +0.6
10,013 - -0.1
10,062 - +0.5
10,119 + -1.4
10,121 + +1.1
10,299 - +1.5
10,345 + +1.2
10,461 - +0.3
10,612 - PGA1_65p00070 0.24 +0.6
10,613 - PGA1_65p00070 0.24 +1.0
10,614 + PGA1_65p00070 0.25 +0.1
10,691 + PGA1_65p00070 0.34 +0.6
11,219 - +0.2
11,234 - -0.6
11,241 + -0.2
11,442 - -1.2
11,749 - PGA1_65p00080 0.33 +0.5
11,785 - PGA1_65p00080 0.36 -0.7
11,802 + PGA1_65p00080 0.38 -0.2
11,869 - PGA1_65p00080 0.43 -0.8
12,021 + PGA1_65p00080 0.55 -0.5
12,053 + PGA1_65p00080 0.58 +0.9
12,083 - PGA1_65p00080 0.60 -1.5
12,139 - PGA1_65p00080 0.65 +0.7
12,155 + PGA1_65p00080 0.66 -0.5

Or see this region's nucleotide sequence