Experiment: m.b. Cholin acetate 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_78p00050 and PGA1_78p00060 are separated by 166 nucleotides PGA1_78p00060 and PGA1_78p00070 are separated by 83 nucleotides PGA1_78p00070 and PGA1_78p00080 overlap by 4 nucleotides
PGA1_78p00050: PGA1_78p00050 - peroxidase/catalase HPI, at 5,749 to 7,917
_78p00050
PGA1_78p00060: PGA1_78p00060 - Uncharacterized protein conserved in bacteria, at 8,084 to 8,437
_78p00060
PGA1_78p00070: PGA1_78p00070 - 'RNA polymerase sigma-70, ECF subfamily; ECF26 subgroup', at 8,521 to 9,078
_78p00070
PGA1_78p00080: PGA1_78p00080 - Predicted transmembrane transcriptional regulator (anti-sigma factor), at 9,075 to 9,917
_78p00080
Position (kb) 8
9 Strain fitness (log2 ratio) -2
-1
0
1 at 7.158 kb on - strand, within PGA1_78p00050 at 7.178 kb on + strand, within PGA1_78p00050 at 7.186 kb on - strand at 7.270 kb on + strand, within PGA1_78p00050 at 7.280 kb on + strand, within PGA1_78p00050 at 7.338 kb on - strand, within PGA1_78p00050 at 8.064 kb on + strand at 8.064 kb on + strand at 8.067 kb on - strand at 8.112 kb on + strand at 8.145 kb on - strand, within PGA1_78p00060 at 8.200 kb on - strand, within PGA1_78p00060 at 8.200 kb on - strand, within PGA1_78p00060 at 8.207 kb on - strand, within PGA1_78p00060 at 8.887 kb on + strand, within PGA1_78p00070 at 9.072 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 15 mM remove 7,158 - PGA1_78p00050 0.65 +1.5 7,178 + PGA1_78p00050 0.66 -1.7 7,186 - +1.5 7,270 + PGA1_78p00050 0.70 -0.4 7,280 + PGA1_78p00050 0.71 -1.0 7,338 - PGA1_78p00050 0.73 +0.1 8,064 + +0.7 8,064 + -0.2 8,067 - +0.9 8,112 + -0.2 8,145 - PGA1_78p00060 0.17 -2.3 8,200 - PGA1_78p00060 0.33 -1.0 8,200 - PGA1_78p00060 0.33 +1.3 8,207 - PGA1_78p00060 0.35 +1.0 8,887 + PGA1_78p00070 0.66 +0.1 9,072 + +0.4
Or see this region's nucleotide sequence