Experiment: m.b. Cholin acetate 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00300 and PGA1_262p00310 are separated by 67 nucleotides PGA1_262p00310 and PGA1_262p00320 overlap by 4 nucleotides PGA1_262p00320 and PGA1_262p00330 are separated by 13 nucleotides
PGA1_262p00300: PGA1_262p00300 - ABC transporter, extracellular solute-binding protein, at 33,414 to 35,000
_262p00300
PGA1_262p00310: PGA1_262p00310 - glutathione transport system permease protein GsiC, at 35,068 to 36,009
_262p00310
PGA1_262p00320: PGA1_262p00320 - ABC transporter, inner membrane component, at 36,006 to 36,872
_262p00320
PGA1_262p00330: PGA1_262p00330 - oligopeptide ABC transporter, ATP binding protein, at 36,886 to 37,884
_262p00330
Position (kb) 35
36
37 Strain fitness (log2 ratio) -1
0
1 at 34.198 kb on - strand, within PGA1_262p00300 at 34.258 kb on - strand, within PGA1_262p00300 at 34.383 kb on - strand, within PGA1_262p00300 at 34.457 kb on + strand, within PGA1_262p00300 at 34.488 kb on - strand, within PGA1_262p00300 at 34.504 kb on - strand, within PGA1_262p00300 at 34.923 kb on - strand at 34.955 kb on - strand at 35.105 kb on - strand at 35.288 kb on - strand, within PGA1_262p00310 at 35.290 kb on + strand, within PGA1_262p00310 at 35.296 kb on - strand, within PGA1_262p00310 at 35.298 kb on - strand, within PGA1_262p00310 at 35.298 kb on - strand, within PGA1_262p00310 at 35.307 kb on - strand, within PGA1_262p00310 at 35.453 kb on + strand, within PGA1_262p00310 at 35.474 kb on - strand, within PGA1_262p00310 at 35.624 kb on + strand, within PGA1_262p00310 at 35.920 kb on + strand at 36.023 kb on + strand at 36.154 kb on + strand, within PGA1_262p00320 at 36.242 kb on - strand, within PGA1_262p00320 at 36.376 kb on - strand, within PGA1_262p00320 at 36.425 kb on - strand, within PGA1_262p00320 at 36.425 kb on - strand, within PGA1_262p00320 at 36.491 kb on - strand, within PGA1_262p00320 at 36.515 kb on - strand, within PGA1_262p00320 at 36.632 kb on - strand, within PGA1_262p00320 at 36.882 kb on + strand at 36.927 kb on + strand at 36.955 kb on + strand at 36.983 kb on + strand at 36.999 kb on + strand, within PGA1_262p00330
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 15 mM remove 34,198 - PGA1_262p00300 0.49 +0.1 34,258 - PGA1_262p00300 0.53 +0.3 34,383 - PGA1_262p00300 0.61 +0.5 34,457 + PGA1_262p00300 0.66 -0.7 34,488 - PGA1_262p00300 0.68 +0.8 34,504 - PGA1_262p00300 0.69 +0.3 34,923 - -0.1 34,955 - +0.1 35,105 - +0.2 35,288 - PGA1_262p00310 0.23 +0.1 35,290 + PGA1_262p00310 0.24 +1.0 35,296 - PGA1_262p00310 0.24 +1.6 35,298 - PGA1_262p00310 0.24 +0.2 35,298 - PGA1_262p00310 0.24 +1.4 35,307 - PGA1_262p00310 0.25 +1.4 35,453 + PGA1_262p00310 0.41 +0.4 35,474 - PGA1_262p00310 0.43 +0.1 35,624 + PGA1_262p00310 0.59 -0.8 35,920 + -0.8 36,023 + +0.8 36,154 + PGA1_262p00320 0.17 +0.0 36,242 - PGA1_262p00320 0.27 -1.5 36,376 - PGA1_262p00320 0.43 +0.0 36,425 - PGA1_262p00320 0.48 -0.1 36,425 - PGA1_262p00320 0.48 +1.0 36,491 - PGA1_262p00320 0.56 +1.4 36,515 - PGA1_262p00320 0.59 -0.2 36,632 - PGA1_262p00320 0.72 -0.5 36,882 + -0.7 36,927 + +0.9 36,955 + -1.4 36,983 + +0.7 36,999 + PGA1_262p00330 0.11 +0.4
Or see this region's nucleotide sequence