Strain Fitness in Marinobacter adhaerens HP15 around HP15_3355

Experiment: m.b. Ceftazidime 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3353 and HP15_3354 are separated by 77 nucleotidesHP15_3354 and HP15_3355 are separated by 53 nucleotidesHP15_3355 and HP15_3356 overlap by 4 nucleotides HP15_3353: HP15_3353 - 4-hydroxybenzoate octaprenyltransferase, at 3,514,927 to 3,515,814 _3353 HP15_3354: HP15_3354 - two component transcriptional regulator, winged helix family, at 3,515,892 to 3,516,584 _3354 HP15_3355: HP15_3355 - multi-sensor signal transduction histidine kinase, at 3,516,638 to 3,517,957 _3355 HP15_3356: HP15_3356 - response regulator receiver protein, at 3,517,954 to 3,518,823 _3356 Position (kb) 3516 3517 3518Strain fitness (log2 ratio) -2 -1 0 1at 3515.827 kb on - strandat 3515.834 kb on + strandat 3515.842 kb on - strandat 3515.880 kb on + strandat 3515.888 kb on + strandat 3516.036 kb on + strand, within HP15_3354at 3516.131 kb on + strand, within HP15_3354at 3516.281 kb on - strand, within HP15_3354at 3516.307 kb on - strand, within HP15_3354at 3516.319 kb on - strand, within HP15_3354at 3516.341 kb on + strand, within HP15_3354at 3516.418 kb on - strand, within HP15_3354at 3516.609 kb on + strandat 3516.740 kb on - strandat 3516.888 kb on - strand, within HP15_3355at 3516.930 kb on - strand, within HP15_3355at 3517.062 kb on + strand, within HP15_3355at 3517.216 kb on + strand, within HP15_3355at 3517.294 kb on + strand, within HP15_3355at 3517.417 kb on - strand, within HP15_3355at 3517.644 kb on + strand, within HP15_3355at 3517.743 kb on - strand, within HP15_3355at 3518.244 kb on - strand, within HP15_3356at 3518.257 kb on + strand, within HP15_3356at 3518.271 kb on - strand, within HP15_3356at 3518.279 kb on + strand, within HP15_3356at 3518.298 kb on + strand, within HP15_3356at 3518.315 kb on - strand, within HP15_3356at 3518.347 kb on - strand, within HP15_3356at 3518.347 kb on - strand, within HP15_3356at 3518.357 kb on + strand, within HP15_3356at 3518.831 kb on + strandat 3518.831 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml
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3,515,827 - -0.3
3,515,834 + -0.1
3,515,842 - -0.4
3,515,880 + -0.8
3,515,888 + -1.7
3,516,036 + HP15_3354 0.21 -2.4
3,516,131 + HP15_3354 0.34 +0.4
3,516,281 - HP15_3354 0.56 -0.6
3,516,307 - HP15_3354 0.60 -1.5
3,516,319 - HP15_3354 0.62 +0.3
3,516,341 + HP15_3354 0.65 +0.6
3,516,418 - HP15_3354 0.76 -0.6
3,516,609 + -0.1
3,516,740 - -1.2
3,516,888 - HP15_3355 0.19 +0.9
3,516,930 - HP15_3355 0.22 -0.4
3,517,062 + HP15_3355 0.32 -0.1
3,517,216 + HP15_3355 0.44 +0.4
3,517,294 + HP15_3355 0.50 -0.3
3,517,417 - HP15_3355 0.59 -0.9
3,517,644 + HP15_3355 0.76 -0.4
3,517,743 - HP15_3355 0.84 +0.7
3,518,244 - HP15_3356 0.33 -0.1
3,518,257 + HP15_3356 0.35 -1.0
3,518,271 - HP15_3356 0.36 -0.4
3,518,279 + HP15_3356 0.37 -0.0
3,518,298 + HP15_3356 0.40 +0.2
3,518,315 - HP15_3356 0.41 +0.1
3,518,347 - HP15_3356 0.45 -0.1
3,518,347 - HP15_3356 0.45 -0.6
3,518,357 + HP15_3356 0.46 -0.0
3,518,831 + +0.3
3,518,831 + +0.9

Or see this region's nucleotide sequence